ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Gene Report

Basic Info

Approved Symbol	SNRPB
Previous Symbol	SNRPB1
Symbol Alias	COD, SmB/SmB', Sm-B/B', snRNP-B
Approved Name	small nuclear ribonucleoprotein polypeptides B and B1
Location	20p13
Position	chr20:2442280-2451499, -1
External Links	HGNC: 11153 Entrez Gene: 6628 Ensembl: ENSG00000125835 UCSC: uc002wfz.1
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	Mapped by PBA pathway

Gene related studies (count: 0)

Gene related SNPs (count: 0)

Gene related CNVs (count: 0)

Gene related other variant (count: 0)

Gene related regions (count: 0)

Gene related GO terms (count: 20)

GO terms by PBA (with statistical significance of FDR<0.05) (count: 1)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0005681	spliceosomal complex	cellular component	TAS[2531083]	43

GO terms by database search (count: 19)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0008334	histone mRNA metabolic process	biological process	TAS	6
GO:0008380	RNA splicing	biological process	TAS	70
GO:0005683	U7 snRNP	cellular component	IDA[11574479]	5
GO:0000398	mRNA splicing, via spliceosome	biological process	IC[11991638]; TAS	58
GO:0005689	U12-type spliceosomal complex	cellular component	IDA[15146077]	17
GO:0006397	mRNA processing	biological process	TAS	53
GO:0000387	spliceosomal snRNP assembly	biological process	TAS	11
GO:0071013	catalytic step 2 spliceosome	cellular component	IDA[11991638]	33
GO:0034660	ncRNA metabolic process	biological process	TAS	9
GO:0016070	RNA metabolic process	biological process	TAS	54
GO:0005654	nucleoplasm	cellular component	TAS	210
GO:0071204	histone pre-mRNA 3'end processing complex	cellular component	IEA	2
GO:0005829	cytosol	cellular component	TAS	485
GO:0030532	small nuclear ribonucleoprotein complex	cellular component	TAS[2531083]	12
GO:0071208	histone pre-mRNA DCP binding	molecular function	IEA	2
GO:0010467	gene expression	biological process	TAS	154
GO:0005515	protein binding	molecular function	IPI[15494309]	1015
GO:0006369	termination of RNA polymerase II transcription	biological process	TAS	15
GO:0006366	transcription from RNA polymerase II promoter	biological process	TAS	63

Gene related KEGG pathways (count: 1)

ID	Name	No. of Genes in ADHDgene	Brief Description
hsa05322	Systemic lupus erythematosus	20

Genes shared at least 5 GO terms with SNRPB (count: 59)

Gene Symbol	Pathway Count	Pathway List
SNRPD3	19	histone mRNA metabolic process; RNA splicing; U7 snRNP; mRNA splicing, via spliceosome; U12-type spliceosomal complex; mRNA processing; spliceosomal snRNP assembly; catalytic step 2 spliceosome; ncRNA metabolic process; RNA metabolic process; nucleoplasm; cytosol; small nuclear ribonucleoprotein complex; spliceosomal complex; histone pre-mRNA DCP binding; gene expression; protein binding; termination of RNA polymerase II transcription; transcription from RNA polymerase II promoter;
SNRPG	18	histone mRNA metabolic process; RNA splicing; U7 snRNP; mRNA splicing, via spliceosome; U12-type spliceosomal complex; mRNA processing; spliceosomal snRNP assembly; catalytic step 2 spliceosome; ncRNA metabolic process; RNA metabolic process; nucleoplasm; cytosol; small nuclear ribonucleoprotein complex; spliceosomal complex; gene expression; protein binding; termination of RNA polymerase II transcription; transcription from RNA polymerase II promoter;
SNRPF	17	histone mRNA metabolic process; RNA splicing; U7 snRNP; mRNA splicing, via spliceosome; U12-type spliceosomal complex; mRNA processing; spliceosomal snRNP assembly; catalytic step 2 spliceosome; ncRNA metabolic process; RNA metabolic process; nucleoplasm; cytosol; small nuclear ribonucleoprotein complex; spliceosomal complex; gene expression; termination of RNA polymerase II transcription; transcription from RNA polymerase II promoter;
NCBP1	13	histone mRNA metabolic process; RNA splicing; mRNA splicing, via spliceosome; mRNA processing; spliceosomal snRNP assembly; ncRNA metabolic process; RNA metabolic process; nucleoplasm; cytosol; gene expression; protein binding; termination of RNA polymerase II transcription; transcription from RNA polymerase II promoter;
SNRPD2	13	RNA splicing; mRNA splicing, via spliceosome; U12-type spliceosomal complex; spliceosomal snRNP assembly; catalytic step 2 spliceosome; ncRNA metabolic process; RNA metabolic process; nucleoplasm; cytosol; small nuclear ribonucleoprotein complex; spliceosomal complex; gene expression; protein binding;
SNRPD1	12	RNA splicing; mRNA splicing, via spliceosome; U12-type spliceosomal complex; spliceosomal snRNP assembly; catalytic step 2 spliceosome; ncRNA metabolic process; RNA metabolic process; nucleoplasm; cytosol; small nuclear ribonucleoprotein complex; gene expression; protein binding;
GEMIN2	10	RNA splicing; mRNA processing; spliceosomal snRNP assembly; ncRNA metabolic process; RNA metabolic process; nucleoplasm; cytosol; spliceosomal complex; gene expression; protein binding;
U2AF1	10	RNA splicing; mRNA splicing, via spliceosome; mRNA processing; catalytic step 2 spliceosome; nucleoplasm; spliceosomal complex; gene expression; protein binding; termination of RNA polymerase II transcription; transcription from RNA polymerase II promoter;
LSM11	9	histone mRNA metabolic process; U7 snRNP; mRNA processing; nucleoplasm; histone pre-mRNA 3'end processing complex; gene expression; protein binding; termination of RNA polymerase II transcription; transcription from RNA polymerase II promoter;
U2AF2	9	RNA splicing; mRNA splicing, via spliceosome; mRNA processing; nucleoplasm; spliceosomal complex; gene expression; protein binding; termination of RNA polymerase II transcription; transcription from RNA polymerase II promoter;
SF3B3	9	RNA splicing; mRNA splicing, via spliceosome; U12-type spliceosomal complex; mRNA processing; catalytic step 2 spliceosome; nucleoplasm; small nuclear ribonucleoprotein complex; spliceosomal complex; gene expression;
RNPS1	9	RNA splicing; mRNA splicing, via spliceosome; RNA metabolic process; nucleoplasm; cytosol; gene expression; protein binding; termination of RNA polymerase II transcription; transcription from RNA polymerase II promoter;
SF3A3	8	RNA splicing; mRNA splicing, via spliceosome; mRNA processing; catalytic step 2 spliceosome; nucleoplasm; spliceosomal complex; gene expression; protein binding;
HNRNPA2B1	8	RNA splicing; mRNA splicing, via spliceosome; mRNA processing; catalytic step 2 spliceosome; nucleoplasm; spliceosomal complex; gene expression; protein binding;
SF3B2	8	RNA splicing; mRNA splicing, via spliceosome; U12-type spliceosomal complex; mRNA processing; catalytic step 2 spliceosome; nucleoplasm; spliceosomal complex; gene expression;
CPSF3	8	RNA splicing; mRNA splicing, via spliceosome; mRNA processing; nucleoplasm; gene expression; protein binding; termination of RNA polymerase II transcription; transcription from RNA polymerase II promoter;
CPSF7	8	RNA splicing; mRNA splicing, via spliceosome; mRNA processing; nucleoplasm; gene expression; protein binding; termination of RNA polymerase II transcription; transcription from RNA polymerase II promoter;
SF3A2	8	RNA splicing; mRNA splicing, via spliceosome; mRNA processing; catalytic step 2 spliceosome; nucleoplasm; small nuclear ribonucleoprotein complex; spliceosomal complex; gene expression;
SF3B4	8	RNA splicing; mRNA splicing, via spliceosome; U12-type spliceosomal complex; mRNA processing; nucleoplasm; spliceosomal complex; gene expression; protein binding;
SNRPA1	8	RNA splicing; mRNA splicing, via spliceosome; catalytic step 2 spliceosome; nucleoplasm; small nuclear ribonucleoprotein complex; spliceosomal complex; gene expression; protein binding;
CDC40	8	RNA splicing; mRNA splicing, via spliceosome; catalytic step 2 spliceosome; nucleoplasm; spliceosomal complex; gene expression; termination of RNA polymerase II transcription; transcription from RNA polymerase II promoter;
SF3A1	8	RNA splicing; mRNA splicing, via spliceosome; mRNA processing; catalytic step 2 spliceosome; nucleoplasm; spliceosomal complex; gene expression; protein binding;
EFTUD2	8	RNA splicing; mRNA splicing, via spliceosome; mRNA processing; catalytic step 2 spliceosome; nucleoplasm; spliceosomal complex; gene expression; protein binding;
SNRPB2	8	RNA splicing; mRNA splicing, via spliceosome; mRNA processing; catalytic step 2 spliceosome; nucleoplasm; spliceosomal complex; gene expression; protein binding;
PRPF8	7	RNA splicing; mRNA splicing, via spliceosome; mRNA processing; catalytic step 2 spliceosome; nucleoplasm; gene expression; protein binding;
HNRNPC	7	RNA splicing; mRNA splicing, via spliceosome; catalytic step 2 spliceosome; nucleoplasm; spliceosomal complex; gene expression; protein binding;
HSPA8	7	RNA splicing; mRNA processing; RNA metabolic process; cytosol; spliceosomal complex; gene expression; protein binding;
SNRNP200	7	RNA splicing; mRNA splicing, via spliceosome; catalytic step 2 spliceosome; nucleoplasm; spliceosomal complex; gene expression; protein binding;
CLP1	7	RNA splicing; mRNA splicing, via spliceosome; mRNA processing; nucleoplasm; gene expression; termination of RNA polymerase II transcription; transcription from RNA polymerase II promoter;
LSM4	7	RNA splicing; mRNA processing; RNA metabolic process; cytosol; small nuclear ribonucleoprotein complex; gene expression; protein binding;
HNRNPA1	7	RNA splicing; mRNA splicing, via spliceosome; mRNA processing; catalytic step 2 spliceosome; nucleoplasm; spliceosomal complex; gene expression;
PCF11	7	RNA splicing; mRNA splicing, via spliceosome; mRNA processing; nucleoplasm; gene expression; termination of RNA polymerase II transcription; transcription from RNA polymerase II promoter;
PRPF6	7	RNA splicing; mRNA splicing, via spliceosome; catalytic step 2 spliceosome; nucleoplasm; spliceosomal complex; gene expression; protein binding;
DDX23	6	RNA splicing; mRNA splicing, via spliceosome; catalytic step 2 spliceosome; nucleoplasm; gene expression; protein binding;
SNRPA	6	RNA splicing; mRNA splicing, via spliceosome; nucleoplasm; spliceosomal complex; gene expression; protein binding;
TXNL4A	6	RNA splicing; mRNA splicing, via spliceosome; nucleoplasm; spliceosomal complex; gene expression; protein binding;
HNRNPH1	6	RNA splicing; mRNA splicing, via spliceosome; catalytic step 2 spliceosome; nucleoplasm; gene expression; protein binding;
PRPF4	6	RNA splicing; mRNA splicing, via spliceosome; nucleoplasm; spliceosomal complex; gene expression; protein binding;
SNW1	6	mRNA splicing, via spliceosome; catalytic step 2 spliceosome; nucleoplasm; spliceosomal complex; gene expression; protein binding;
SART1	6	mRNA splicing, via spliceosome; spliceosomal snRNP assembly; catalytic step 2 spliceosome; nucleoplasm; cytosol; protein binding;
CLNS1A	6	spliceosomal snRNP assembly; ncRNA metabolic process; RNA metabolic process; cytosol; gene expression; protein binding;
PHF5A	5	RNA splicing; mRNA splicing, via spliceosome; U12-type spliceosomal complex; nucleoplasm; gene expression;
FUS	5	RNA splicing; mRNA splicing, via spliceosome; nucleoplasm; gene expression; protein binding;
DHX9	5	RNA splicing; mRNA splicing, via spliceosome; nucleoplasm; gene expression; protein binding;
DHX8	5	RNA splicing; mRNA splicing, via spliceosome; catalytic step 2 spliceosome; spliceosomal complex; protein binding;
POLR2G	5	RNA splicing; mRNA splicing, via spliceosome; nucleoplasm; gene expression; transcription from RNA polymerase II promoter;
SUGP1	5	RNA splicing; mRNA splicing, via spliceosome; nucleoplasm; spliceosomal complex; gene expression;
SMC1A	5	RNA splicing; mRNA splicing, via spliceosome; nucleoplasm; gene expression; protein binding;
CD2BP2	5	RNA splicing; mRNA splicing, via spliceosome; nucleoplasm; gene expression; protein binding;
UBC	5	RNA metabolic process; nucleoplasm; cytosol; gene expression; protein binding;
PSMC3	5	RNA metabolic process; nucleoplasm; cytosol; gene expression; protein binding;
UBB	5	RNA metabolic process; nucleoplasm; cytosol; gene expression; protein binding;
PSMD7	5	RNA metabolic process; nucleoplasm; cytosol; gene expression; protein binding;
PSMD5	5	RNA metabolic process; nucleoplasm; cytosol; gene expression; protein binding;
PSMB7	5	RNA metabolic process; nucleoplasm; cytosol; gene expression; protein binding;
RPS2	5	RNA metabolic process; nucleoplasm; cytosol; gene expression; protein binding;
XPO1	5	RNA metabolic process; nucleoplasm; cytosol; gene expression; protein binding;
TCEB2	5	nucleoplasm; cytosol; gene expression; protein binding; transcription from RNA polymerase II promoter;
TCEB1	5	nucleoplasm; cytosol; gene expression; protein binding; transcription from RNA polymerase II promoter;

Genes shared at least 2 KEGG pathways with SNRPB (count: 0)

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Region: chr20:2442280..2451499 View in gBrowse