ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Gene Report

Basic Info

Approved Symbol	SNRPD2
Previous Symbol	SNRPD1
Symbol Alias	Sm-D2
Approved Name	small nuclear ribonucleoprotein D2 polypeptide 16.5kDa
Previous Name	"small nuclear ribonucleoprotein D2 polypeptide (16.5kD)"
Name Alias	"snRNP core protein D2"
Location	19q13.2-q13.3
Position	chr19:46190712-46195827, -1
External Links	HGNC: 11159 Entrez Gene: 6633 Ensembl: ENSG00000125743 UCSC: uc002pcw.3
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	Mapped by PBA pathway

Gene related studies (count: 0)

Gene related SNPs (count: 0)

Gene related CNVs (count: 0)

Gene related other variant (count: 0)

Gene related regions (count: 0)

Gene related GO terms (count: 14)

GO terms by PBA (with statistical significance of FDR<0.05) (count: 1)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0005681	spliceosomal complex	cellular component	TAS[1701240]	43

GO terms by database search (count: 13)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0005654	nucleoplasm	cellular component	TAS	210
GO:0005515	protein binding	molecular function	IPI[11748230]	1015
GO:0016070	RNA metabolic process	biological process	TAS	54
GO:0000398	mRNA splicing, via spliceosome	biological process	IC[11991638]; TAS	58
GO:0000245	spliceosomal complex assembly	biological process	TAS[7527560]	9
GO:0034660	ncRNA metabolic process	biological process	TAS	9
GO:0008380	RNA splicing	biological process	TAS	70
GO:0030532	small nuclear ribonucleoprotein complex	cellular component	TAS[1701240]	12
GO:0071013	catalytic step 2 spliceosome	cellular component	IDA[11991638]	33
GO:0000387	spliceosomal snRNP assembly	biological process	TAS	11
GO:0005689	U12-type spliceosomal complex	cellular component	IDA[15146077]	17
GO:0005829	cytosol	cellular component	TAS	485
GO:0010467	gene expression	biological process	TAS	154

Gene related KEGG pathways (count: 0)

Genes shared at least 5 GO terms with SNRPD2 (count: 54)

Gene Symbol	Pathway Count	Pathway List
SNRPG	14	spliceosomal complex; nucleoplasm; protein binding; RNA metabolic process; mRNA splicing, via spliceosome; spliceosomal complex assembly; ncRNA metabolic process; RNA splicing; small nuclear ribonucleoprotein complex; catalytic step 2 spliceosome; spliceosomal snRNP assembly; U12-type spliceosomal complex; cytosol; gene expression;
SNRPB	13	spliceosomal complex; nucleoplasm; protein binding; RNA metabolic process; mRNA splicing, via spliceosome; ncRNA metabolic process; RNA splicing; small nuclear ribonucleoprotein complex; catalytic step 2 spliceosome; spliceosomal snRNP assembly; U12-type spliceosomal complex; cytosol; gene expression;
SNRPD3	13	spliceosomal complex; nucleoplasm; protein binding; RNA metabolic process; mRNA splicing, via spliceosome; ncRNA metabolic process; RNA splicing; small nuclear ribonucleoprotein complex; catalytic step 2 spliceosome; spliceosomal snRNP assembly; U12-type spliceosomal complex; cytosol; gene expression;
SNRPD1	13	nucleoplasm; protein binding; RNA metabolic process; mRNA splicing, via spliceosome; spliceosomal complex assembly; ncRNA metabolic process; RNA splicing; small nuclear ribonucleoprotein complex; catalytic step 2 spliceosome; spliceosomal snRNP assembly; U12-type spliceosomal complex; cytosol; gene expression;
SNRPF	12	spliceosomal complex; nucleoplasm; RNA metabolic process; mRNA splicing, via spliceosome; ncRNA metabolic process; RNA splicing; small nuclear ribonucleoprotein complex; catalytic step 2 spliceosome; spliceosomal snRNP assembly; U12-type spliceosomal complex; cytosol; gene expression;
GEMIN2	10	spliceosomal complex; nucleoplasm; protein binding; RNA metabolic process; spliceosomal complex assembly; ncRNA metabolic process; RNA splicing; spliceosomal snRNP assembly; cytosol; gene expression;
NCBP1	9	nucleoplasm; protein binding; RNA metabolic process; mRNA splicing, via spliceosome; ncRNA metabolic process; RNA splicing; spliceosomal snRNP assembly; cytosol; gene expression;
SF3B3	8	spliceosomal complex; nucleoplasm; mRNA splicing, via spliceosome; RNA splicing; small nuclear ribonucleoprotein complex; catalytic step 2 spliceosome; U12-type spliceosomal complex; gene expression;
PRPF6	8	spliceosomal complex; nucleoplasm; protein binding; mRNA splicing, via spliceosome; spliceosomal complex assembly; RNA splicing; catalytic step 2 spliceosome; gene expression;
SNRPA1	8	spliceosomal complex; nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; small nuclear ribonucleoprotein complex; catalytic step 2 spliceosome; gene expression;
HNRNPA2B1	7	spliceosomal complex; nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; catalytic step 2 spliceosome; gene expression;
SNRPB2	7	spliceosomal complex; nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; catalytic step 2 spliceosome; gene expression;
SNRNP200	7	spliceosomal complex; nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; catalytic step 2 spliceosome; gene expression;
HNRNPC	7	spliceosomal complex; nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; catalytic step 2 spliceosome; gene expression;
TXNL4A	7	spliceosomal complex; nucleoplasm; protein binding; mRNA splicing, via spliceosome; spliceosomal complex assembly; RNA splicing; gene expression;
U2AF1	7	spliceosomal complex; nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; catalytic step 2 spliceosome; gene expression;
SF3B4	7	spliceosomal complex; nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; U12-type spliceosomal complex; gene expression;
SF3A1	7	spliceosomal complex; nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; catalytic step 2 spliceosome; gene expression;
SF3A2	7	spliceosomal complex; nucleoplasm; mRNA splicing, via spliceosome; RNA splicing; small nuclear ribonucleoprotein complex; catalytic step 2 spliceosome; gene expression;
EFTUD2	7	spliceosomal complex; nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; catalytic step 2 spliceosome; gene expression;
SF3B2	7	spliceosomal complex; nucleoplasm; mRNA splicing, via spliceosome; RNA splicing; catalytic step 2 spliceosome; U12-type spliceosomal complex; gene expression;
SF3A3	7	spliceosomal complex; nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; catalytic step 2 spliceosome; gene expression;
RNPS1	7	nucleoplasm; protein binding; RNA metabolic process; mRNA splicing, via spliceosome; RNA splicing; cytosol; gene expression;
CDC40	6	spliceosomal complex; nucleoplasm; mRNA splicing, via spliceosome; RNA splicing; catalytic step 2 spliceosome; gene expression;
HSPA8	6	spliceosomal complex; protein binding; RNA metabolic process; RNA splicing; cytosol; gene expression;
HNRNPA1	6	spliceosomal complex; nucleoplasm; mRNA splicing, via spliceosome; RNA splicing; catalytic step 2 spliceosome; gene expression;
U2AF2	6	spliceosomal complex; nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; gene expression;
PRPF4	6	spliceosomal complex; nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; gene expression;
SNRPA	6	spliceosomal complex; nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; gene expression;
SNW1	6	spliceosomal complex; nucleoplasm; protein binding; mRNA splicing, via spliceosome; catalytic step 2 spliceosome; gene expression;
HNRNPH1	6	nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; catalytic step 2 spliceosome; gene expression;
PRPF8	6	nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; catalytic step 2 spliceosome; gene expression;
SART1	6	nucleoplasm; protein binding; mRNA splicing, via spliceosome; catalytic step 2 spliceosome; spliceosomal snRNP assembly; cytosol;
DDX23	6	nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; catalytic step 2 spliceosome; gene expression;
CLNS1A	6	protein binding; RNA metabolic process; ncRNA metabolic process; spliceosomal snRNP assembly; cytosol; gene expression;
LSM4	6	protein binding; RNA metabolic process; RNA splicing; small nuclear ribonucleoprotein complex; cytosol; gene expression;
DHX8	5	spliceosomal complex; protein binding; mRNA splicing, via spliceosome; RNA splicing; catalytic step 2 spliceosome;
SUGP1	5	spliceosomal complex; nucleoplasm; mRNA splicing, via spliceosome; RNA splicing; gene expression;
PSMD7	5	nucleoplasm; protein binding; RNA metabolic process; cytosol; gene expression;
PSMD5	5	nucleoplasm; protein binding; RNA metabolic process; cytosol; gene expression;
XPO1	5	nucleoplasm; protein binding; RNA metabolic process; cytosol; gene expression;
RPS2	5	nucleoplasm; protein binding; RNA metabolic process; cytosol; gene expression;
CD2BP2	5	nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; gene expression;
CPSF3	5	nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; gene expression;
CPSF7	5	nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; gene expression;
PSMB7	5	nucleoplasm; protein binding; RNA metabolic process; cytosol; gene expression;
PSMC3	5	nucleoplasm; protein binding; RNA metabolic process; cytosol; gene expression;
DHX9	5	nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; gene expression;
SMC1A	5	nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; gene expression;
UBC	5	nucleoplasm; protein binding; RNA metabolic process; cytosol; gene expression;
FUS	5	nucleoplasm; protein binding; mRNA splicing, via spliceosome; RNA splicing; gene expression;
PHF5A	5	nucleoplasm; mRNA splicing, via spliceosome; RNA splicing; U12-type spliceosomal complex; gene expression;
UBB	5	nucleoplasm; protein binding; RNA metabolic process; cytosol; gene expression;
ZRSR2	5	protein binding; mRNA splicing, via spliceosome; spliceosomal complex assembly; RNA splicing; U12-type spliceosomal complex;

Genes shared at least 2 KEGG pathways with SNRPD2 (count: 0)

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Region: chr19:46190712..46195827 View in gBrowse