ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Gene Report

Basic Info

Approved Symbol	SNRPB2
Symbol Alias	Msl1
Approved Name	small nuclear ribonucleoprotein polypeptide B
Previous Name	"small nuclear ribonucleoprotein polypeptide B2", "small nuclear ribonucleoprotein polypeptide B''"
Location	20p12.1
Position	chr20:16710606-16722421, 1
External Links	HGNC: 11155 Entrez Gene: 6629 Ensembl: ENSG00000125870 UCSC: uc002wpi.2
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	Mapped by PBA pathway

Gene related studies (count: 0)

Gene related SNPs (count: 0)

Gene related CNVs (count: 0)

Gene related other variant (count: 0)

Gene related regions (count: 0)

Gene related GO terms (count: 11)

GO terms by PBA (with statistical significance of FDR<0.05) (count: 1)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0005681	spliceosomal complex	cellular component	IDA[9731529]	43

GO terms by database search (count: 10)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0005686	U2 snRNP	cellular component	TAS[2951739]	4
GO:0000166	nucleotide binding	molecular function	IEA	83
GO:0005515	protein binding	molecular function	IPI[9716128]	1015
GO:0005654	nucleoplasm	cellular component	TAS	210
GO:0017069	snRNA binding	molecular function	IEA	2
GO:0071013	catalytic step 2 spliceosome	cellular component	IDA[11991638]	33
GO:0006397	mRNA processing	biological process	TAS[2951739]	53
GO:0010467	gene expression	biological process	TAS	154
GO:0008380	RNA splicing	biological process	TAS	70
GO:0000398	mRNA splicing, via spliceosome	biological process	IC[9731529]; TAS	58

Gene related KEGG pathways (count: 0)

Genes shared at least 5 GO terms with SNRPB2 (count: 45)

Gene Symbol	Pathway Count	Pathway List
U2AF1	9	nucleotide binding; protein binding; nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
HNRNPA2B1	9	nucleotide binding; protein binding; nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
SNRPA1	8	U2 snRNP; protein binding; nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; gene expression; RNA splicing; mRNA splicing, via spliceosome;
SNRPA	8	nucleotide binding; protein binding; nucleoplasm; spliceosomal complex; snRNA binding; gene expression; RNA splicing; mRNA splicing, via spliceosome;
SF3B4	8	nucleotide binding; protein binding; nucleoplasm; spliceosomal complex; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
U2AF2	8	nucleotide binding; protein binding; nucleoplasm; spliceosomal complex; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
HNRNPC	8	nucleotide binding; protein binding; nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; gene expression; RNA splicing; mRNA splicing, via spliceosome;
HNRNPA1	8	nucleotide binding; nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
SNRPG	8	protein binding; nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
SNRPB	8	protein binding; nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
EFTUD2	8	protein binding; nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
SNRPD3	8	protein binding; nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
SF3A1	8	protein binding; nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
SF3A3	8	protein binding; nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
CPSF7	7	nucleotide binding; protein binding; nucleoplasm; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
HNRNPH1	7	nucleotide binding; protein binding; nucleoplasm; catalytic step 2 spliceosome; gene expression; RNA splicing; mRNA splicing, via spliceosome;
SNRNP200	7	protein binding; nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; gene expression; RNA splicing; mRNA splicing, via spliceosome;
PRPF6	7	protein binding; nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; gene expression; RNA splicing; mRNA splicing, via spliceosome;
PRPF8	7	protein binding; nucleoplasm; catalytic step 2 spliceosome; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
SNRPD2	7	protein binding; nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; gene expression; RNA splicing; mRNA splicing, via spliceosome;
SF3B3	7	nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
SF3A2	7	nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
SF3B2	7	nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
SNRPF	7	nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
FUS	6	nucleotide binding; protein binding; nucleoplasm; gene expression; RNA splicing; mRNA splicing, via spliceosome;
RNPS1	6	nucleotide binding; protein binding; nucleoplasm; gene expression; RNA splicing; mRNA splicing, via spliceosome;
GEMIN2	6	protein binding; nucleoplasm; spliceosomal complex; mRNA processing; gene expression; RNA splicing;
PRPF4	6	protein binding; nucleoplasm; spliceosomal complex; gene expression; RNA splicing; mRNA splicing, via spliceosome;
SNW1	6	protein binding; nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; gene expression; mRNA splicing, via spliceosome;
TXNL4A	6	protein binding; nucleoplasm; spliceosomal complex; gene expression; RNA splicing; mRNA splicing, via spliceosome;
NCBP1	6	protein binding; nucleoplasm; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
SNRPD1	6	protein binding; nucleoplasm; catalytic step 2 spliceosome; gene expression; RNA splicing; mRNA splicing, via spliceosome;
CPSF3	6	protein binding; nucleoplasm; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
DDX23	6	protein binding; nucleoplasm; catalytic step 2 spliceosome; gene expression; RNA splicing; mRNA splicing, via spliceosome;
CDC40	6	nucleoplasm; spliceosomal complex; catalytic step 2 spliceosome; gene expression; RNA splicing; mRNA splicing, via spliceosome;
PHF5A	5	U2 snRNP; nucleoplasm; gene expression; RNA splicing; mRNA splicing, via spliceosome;
RBM4	5	nucleotide binding; protein binding; nucleoplasm; mRNA processing; RNA splicing;
CD2BP2	5	protein binding; nucleoplasm; gene expression; RNA splicing; mRNA splicing, via spliceosome;
HSPA8	5	protein binding; spliceosomal complex; mRNA processing; gene expression; RNA splicing;
DHX9	5	protein binding; nucleoplasm; gene expression; RNA splicing; mRNA splicing, via spliceosome;
DHX8	5	protein binding; spliceosomal complex; catalytic step 2 spliceosome; RNA splicing; mRNA splicing, via spliceosome;
SMC1A	5	protein binding; nucleoplasm; gene expression; RNA splicing; mRNA splicing, via spliceosome;
PCF11	5	nucleoplasm; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;
SUGP1	5	nucleoplasm; spliceosomal complex; gene expression; RNA splicing; mRNA splicing, via spliceosome;
CLP1	5	nucleoplasm; mRNA processing; gene expression; RNA splicing; mRNA splicing, via spliceosome;

Genes shared at least 2 KEGG pathways with SNRPB2 (count: 0)

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Region: chr20:16710606..16722421 View in gBrowse