ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Gene Report

Basic Info

Approved Symbol	LSM11
Symbol Alias	FLJ38273
Approved Name	LSM11, U7 small nuclear RNA associated
Previous Name	LSM11 homolog, U7 small nuclear RNA associated (S. cerevisiae)
Location	5q33.3
Position	chr5:157170703-157187717, +
External Links	HGNC: 30860 Entrez Gene: 134353 Ensembl: ENSG00000155858 UCSC: uc003lxe.1
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	Mapped by significant region

Gene related studies (count: 0)

Gene related SNPs (count: 0)

Gene related CNVs (count: 0)

Gene related other variant (count: 0)

Gene related regions (count: 1)

Region Name	Position	No. of Studies (significant/non-significant/trend)
5q33.3	chr5:155700000-159900000	1 (1/0/0)

Gene related GO terms (count: 13)

GO terms by PBA (with statistical significance of FDR<0.05) (count: 0)

GO terms by database search (count: 13)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0071204	histone pre-mRNA 3'end processing complex	Cellular Component		2
GO:0071209	U7 snRNA binding	Molecular Function	IDA[12975319]	1
GO:0005654	nucleoplasm	Cellular Component		183
GO:0005683	U7 snRNP	Cellular Component	IDA[11574479]	5
GO:0006366	transcription from RNA polymerase II promoter	Biological Process		62
GO:0006369	termination of RNA polymerase II transcription	Biological Process		14
GO:0006397	mRNA processing	Biological Process		50
GO:0006398	histone mRNA 3'-end processing	Biological Process		2
GO:0008334	histone mRNA metabolic process	Biological Process		6
GO:0010467	gene expression	Biological Process		140
GO:0000084	S phase of mitotic cell cycle	Biological Process	IMP[16914750]	20
GO:0005634	nucleus	Cellular Component		770
GO:0005515	protein binding	Molecular Function	IPI[12975319]	910

Gene related KEGG pathways (count: 0)

Genes shared at least 5 GO terms with LSM11 (count: 21)

Gene Symbol	Pathway Count	Pathway List
SNRPB	9	histone pre-mRNA 3'end processing complex; nucleoplasm; U7 snRNP; transcription from RNA polymerase II promoter; termination of RNA polymerase II transcription; mRNA processing; histone mRNA metabolic process; gene expression; protein binding;
NCBP1	8	nucleoplasm; transcription from RNA polymerase II promoter; termination of RNA polymerase II transcription; mRNA processing; histone mRNA metabolic process; gene expression; nucleus; protein binding;
SNRPD3	8	nucleoplasm; U7 snRNP; transcription from RNA polymerase II promoter; termination of RNA polymerase II transcription; mRNA processing; histone mRNA metabolic process; gene expression; protein binding;
SNRPG	8	nucleoplasm; U7 snRNP; transcription from RNA polymerase II promoter; termination of RNA polymerase II transcription; mRNA processing; histone mRNA metabolic process; gene expression; protein binding;
CPSF3	7	nucleoplasm; transcription from RNA polymerase II promoter; termination of RNA polymerase II transcription; mRNA processing; histone mRNA 3'-end processing; gene expression; protein binding;
CPSF7	7	nucleoplasm; transcription from RNA polymerase II promoter; termination of RNA polymerase II transcription; mRNA processing; gene expression; nucleus; protein binding;
SNRPF	7	nucleoplasm; U7 snRNP; transcription from RNA polymerase II promoter; termination of RNA polymerase II transcription; mRNA processing; histone mRNA metabolic process; gene expression;
U2AF1	7	nucleoplasm; transcription from RNA polymerase II promoter; termination of RNA polymerase II transcription; mRNA processing; gene expression; nucleus; protein binding;
U2AF2	6	nucleoplasm; transcription from RNA polymerase II promoter; termination of RNA polymerase II transcription; mRNA processing; gene expression; protein binding;
CLP1	5	nucleoplasm; transcription from RNA polymerase II promoter; termination of RNA polymerase II transcription; mRNA processing; gene expression;
EFTUD2	5	nucleoplasm; mRNA processing; gene expression; nucleus; protein binding;
HNRNPA2B1	5	nucleoplasm; mRNA processing; gene expression; nucleus; protein binding;
MED4	5	nucleoplasm; transcription from RNA polymerase II promoter; gene expression; nucleus; protein binding;
NCOR1	5	nucleoplasm; transcription from RNA polymerase II promoter; gene expression; nucleus; protein binding;
PCF11	5	nucleoplasm; transcription from RNA polymerase II promoter; termination of RNA polymerase II transcription; mRNA processing; gene expression;
PSMC3	5	nucleoplasm; gene expression; S phase of mitotic cell cycle; nucleus; protein binding;
SF3A1	5	nucleoplasm; mRNA processing; gene expression; nucleus; protein binding;
SF3A3	5	nucleoplasm; mRNA processing; gene expression; nucleus; protein binding;
SSRP1	5	nucleoplasm; transcription from RNA polymerase II promoter; gene expression; nucleus; protein binding;
TAF10	5	nucleoplasm; transcription from RNA polymerase II promoter; gene expression; nucleus; protein binding;
TAF13	5	nucleoplasm; transcription from RNA polymerase II promoter; gene expression; nucleus; protein binding;

Genes shared at least 2 KEGG pathways with LSM11 (count: 0)

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Region: chr5:157170703..157187717 View in gBrowse