ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Gene Report

Basic Info

Approved Symbol	TAF13
Previous Symbol	TAF2K
Symbol Alias	TAFII18
Approved Name	TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa
Previous Name	TATA box binding protein (TBP)-associated factor, RNA polymerase II, K, 18kD
Location	1p13.3
Position	chr1:109605121-109618624, -
External Links	HGNC: 11546 Entrez Gene: 6884 Ensembl: ENSG00000197780 UCSC: uc001dwm.1
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	Mapped by CNV

Gene related studies (count: 0)

Gene related SNPs (count: 0)

Gene related CNVs (count: 1)

ID	Location	Size	Band	Type	Inheritance
CNV_Jarick[2012]_1	chr1:109103606-109682244 (NCBI36 / hg18)	578639	1p13.3	dup

Gene related other variant (count: 0)

Gene related regions (count: 0)

Gene related GO terms (count: 15)

GO terms by PBA (with statistical significance of FDR<0.05) (count: 0)

GO terms by database search (count: 15)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0003677	DNA binding	Molecular Function		220
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	NAS[9695952]	132
GO:0005515	protein binding	Molecular Function	IPI[9695952]	910
GO:0005634	nucleus	Cellular Component		770
GO:0005654	nucleoplasm	Cellular Component		183
GO:0005669	transcription factor TFIID complex	Cellular Component	IDA[7729427]; NAS[9695952]	3
GO:0005730	nucleolus	Cellular Component		243
GO:0006366	transcription from RNA polymerase II promoter	Biological Process	IC[7729427]	62
GO:0006352	DNA-dependent transcription, initiation	Biological Process	NAS[9695952]	8
GO:0006368	transcription elongation from RNA polymerase II promoter	Biological Process		10
GO:0006367	transcription initiation from RNA polymerase II promoter	Biological Process	IC[7729427]	42
GO:0010467	gene expression	Biological Process		140
GO:0008022	protein C-terminus binding	Molecular Function	IPI[7729427]	32
GO:0046982	protein heterodimerization activity	Molecular Function		68
GO:0016032	viral reproduction	Biological Process		57

Gene related KEGG pathways (count: 1)

ID	Name	No. of Genes in ADHDgene	Brief Description
hsa03022	Basal transcription factors	6

Genes shared at least 5 GO terms with TAF13 (count: 73)

Gene Symbol	Pathway Count	Pathway List
TAF4B	13	DNA binding; sequence-specific DNA binding transcription factor activity; nucleus; nucleoplasm; transcription factor TFIID complex; nucleolus; transcription from RNA polymerase II promoter; DNA-dependent transcription, initiation; transcription elongation from RNA polymerase II promoter; transcription initiation from RNA polymerase II promoter; gene expression; protein heterodimerization activity; viral reproduction;
TAF10	11	sequence-specific DNA binding transcription factor activity; protein binding; nucleus; nucleoplasm; transcription factor TFIID complex; transcription from RNA polymerase II promoter; DNA-dependent transcription, initiation; transcription elongation from RNA polymerase II promoter; transcription initiation from RNA polymerase II promoter; gene expression; viral reproduction;
SSRP1	9	DNA binding; protein binding; nucleus; nucleoplasm; nucleolus; transcription from RNA polymerase II promoter; transcription elongation from RNA polymerase II promoter; gene expression; viral reproduction;
NCBP1	8	DNA binding; protein binding; nucleus; nucleoplasm; transcription from RNA polymerase II promoter; transcription elongation from RNA polymerase II promoter; gene expression; viral reproduction;
RBPJ	8	DNA binding; sequence-specific DNA binding transcription factor activity; protein binding; nucleus; nucleoplasm; nucleolus; transcription initiation from RNA polymerase II promoter; gene expression;
NCOR2	7	DNA binding; protein binding; nucleus; nucleoplasm; nucleolus; transcription initiation from RNA polymerase II promoter; gene expression;
PGR	7	DNA binding; protein binding; nucleus; nucleoplasm; nucleolus; transcription initiation from RNA polymerase II promoter; gene expression;
XRCC5	7	DNA binding; protein binding; nucleus; nucleoplasm; nucleolus; protein C-terminus binding; viral reproduction;
GTF2H3	7	sequence-specific DNA binding transcription factor activity; nucleoplasm; transcription from RNA polymerase II promoter; transcription elongation from RNA polymerase II promoter; transcription initiation from RNA polymerase II promoter; gene expression; viral reproduction;
NCOR1	7	sequence-specific DNA binding transcription factor activity; protein binding; nucleus; nucleoplasm; transcription from RNA polymerase II promoter; transcription initiation from RNA polymerase II promoter; gene expression;
MED4	7	protein binding; nucleus; nucleoplasm; nucleolus; transcription from RNA polymerase II promoter; transcription initiation from RNA polymerase II promoter; gene expression;
POLR2G	7	nucleus; nucleoplasm; transcription from RNA polymerase II promoter; transcription elongation from RNA polymerase II promoter; transcription initiation from RNA polymerase II promoter; gene expression; viral reproduction;
ATXN1	6	DNA binding; protein binding; nucleus; nucleoplasm; nucleolus; protein C-terminus binding;
DHX9	6	DNA binding; protein binding; nucleus; nucleoplasm; nucleolus; gene expression;
E2F5	6	DNA binding; sequence-specific DNA binding transcription factor activity; protein binding; nucleoplasm; transcription initiation from RNA polymerase II promoter; gene expression;
ESRRA	6	DNA binding; protein binding; nucleus; nucleoplasm; transcription initiation from RNA polymerase II promoter; gene expression;
FUS	6	DNA binding; protein binding; nucleus; nucleoplasm; nucleolus; gene expression;
HINFP	6	DNA binding; sequence-specific DNA binding transcription factor activity; protein binding; nucleus; nucleoplasm; nucleolus;
HMGA1	6	DNA binding; sequence-specific DNA binding transcription factor activity; protein binding; nucleus; nucleoplasm; viral reproduction;
HNF1B	6	DNA binding; sequence-specific DNA binding transcription factor activity; protein binding; nucleus; nucleolus; protein heterodimerization activity;
MRE11A	6	DNA binding; protein binding; nucleus; nucleoplasm; nucleolus; protein C-terminus binding;
NR5A1	6	DNA binding; protein binding; nucleus; nucleoplasm; transcription initiation from RNA polymerase II promoter; gene expression;
MAML1	6	protein binding; nucleus; nucleoplasm; nucleolus; transcription initiation from RNA polymerase II promoter; gene expression;
MED1	6	protein binding; nucleus; nucleoplasm; nucleolus; transcription initiation from RNA polymerase II promoter; gene expression;
MEN1	6	protein binding; nucleus; nucleoplasm; nucleolus; transcription initiation from RNA polymerase II promoter; gene expression;
NCOA6	6	protein binding; nucleus; nucleoplasm; nucleolus; DNA-dependent transcription, initiation; transcription initiation from RNA polymerase II promoter;
NR4A2	6	protein binding; nucleus; nucleoplasm; transcription initiation from RNA polymerase II promoter; gene expression; protein heterodimerization activity;
SMC1A	6	protein binding; nucleus; nucleoplasm; nucleolus; gene expression; protein heterodimerization activity;
SNW1	6	protein binding; nucleus; nucleoplasm; nucleolus; transcription initiation from RNA polymerase II promoter; gene expression;
TCEB1	6	protein binding; nucleoplasm; transcription from RNA polymerase II promoter; transcription elongation from RNA polymerase II promoter; gene expression; viral reproduction;
U2AF1	6	protein binding; nucleus; nucleoplasm; nucleolus; transcription from RNA polymerase II promoter; gene expression;
ETS1	5	DNA binding; sequence-specific DNA binding transcription factor activity; protein binding; nucleus; transcription from RNA polymerase II promoter;
FEN1	5	DNA binding; protein binding; nucleus; nucleoplasm; nucleolus;
H2AFX	5	DNA binding; protein binding; nucleus; nucleoplasm; protein heterodimerization activity;
IRF7	5	DNA binding; protein binding; nucleus; nucleoplasm; transcription from RNA polymerase II promoter;
MAPK1	5	DNA binding; protein binding; nucleus; nucleoplasm; nucleolus;
NFRKB	5	DNA binding; protein binding; nucleus; nucleolus; transcription from RNA polymerase II promoter;
NR4A3	5	DNA binding; nucleus; nucleoplasm; transcription initiation from RNA polymerase II promoter; gene expression;
POLA2	5	DNA binding; nucleus; nucleoplasm; nucleolus; protein heterodimerization activity;
RELA	5	DNA binding; sequence-specific DNA binding transcription factor activity; protein binding; nucleus; nucleoplasm;
TCF25	5	DNA binding; sequence-specific DNA binding transcription factor activity; protein binding; nucleus; nucleolus;
ZNF202	5	DNA binding; sequence-specific DNA binding transcription factor activity; nucleus; transcription from RNA polymerase II promoter; viral reproduction;
ZNF24	5	DNA binding; sequence-specific DNA binding transcription factor activity; protein binding; nucleus; viral reproduction;
ZNF263	5	DNA binding; sequence-specific DNA binding transcription factor activity; nucleus; nucleolus; viral reproduction;
GATA6	5	sequence-specific DNA binding transcription factor activity; protein binding; nucleus; nucleoplasm; transcription from RNA polymerase II promoter;
IRF9	5	sequence-specific DNA binding transcription factor activity; protein binding; nucleus; nucleoplasm; transcription from RNA polymerase II promoter;
NR3C2	5	sequence-specific DNA binding transcription factor activity; protein binding; nucleoplasm; transcription initiation from RNA polymerase II promoter; gene expression;
RORA	5	sequence-specific DNA binding transcription factor activity; protein binding; nucleoplasm; transcription initiation from RNA polymerase II promoter; gene expression;
TARDBP	5	sequence-specific DNA binding transcription factor activity; protein binding; nucleus; nucleolus; transcription from RNA polymerase II promoter;
CPSF7	5	protein binding; nucleus; nucleoplasm; transcription from RNA polymerase II promoter; gene expression;
DDX23	5	protein binding; nucleus; nucleoplasm; nucleolus; gene expression;
DGCR8	5	protein binding; nucleus; nucleoplasm; nucleolus; gene expression;
EFTUD2	5	protein binding; nucleus; nucleoplasm; nucleolus; gene expression;
HNRNPA2B1	5	protein binding; nucleus; nucleoplasm; nucleolus; gene expression;
HNRNPH1	5	protein binding; nucleus; nucleoplasm; nucleolus; gene expression;
LSM11	5	protein binding; nucleus; nucleoplasm; transcription from RNA polymerase II promoter; gene expression;
MAPK3	5	protein binding; nucleus; nucleoplasm; nucleolus; gene expression;
MED15	5	protein binding; nucleus; nucleoplasm; transcription initiation from RNA polymerase II promoter; gene expression;
MED30	5	protein binding; nucleus; nucleoplasm; transcription initiation from RNA polymerase II promoter; gene expression;
NEDD4L	5	protein binding; nucleus; nucleoplasm; transcription initiation from RNA polymerase II promoter; gene expression;
PRPF4	5	protein binding; nucleus; nucleoplasm; nucleolus; gene expression;
PSMC3	5	protein binding; nucleus; nucleoplasm; gene expression; viral reproduction;
RCC1	5	protein binding; nucleus; nucleoplasm; nucleolus; viral reproduction;
SF3A1	5	protein binding; nucleus; nucleoplasm; nucleolus; gene expression;
SF3A3	5	protein binding; nucleus; nucleoplasm; nucleolus; gene expression;
SNRNP200	5	protein binding; nucleus; nucleoplasm; nucleolus; gene expression;
UBB	5	protein binding; nucleoplasm; transcription initiation from RNA polymerase II promoter; gene expression; viral reproduction;
UBC	5	protein binding; nucleoplasm; transcription initiation from RNA polymerase II promoter; gene expression; viral reproduction;
XPO1	5	protein binding; nucleoplasm; nucleolus; gene expression; viral reproduction;
YAP1	5	protein binding; nucleus; nucleoplasm; transcription initiation from RNA polymerase II promoter; gene expression;
MED12	5	nucleus; nucleoplasm; transcription initiation from RNA polymerase II promoter; gene expression; protein C-terminus binding;
MED16	5	nucleus; nucleoplasm; transcription from RNA polymerase II promoter; transcription initiation from RNA polymerase II promoter; gene expression;
SUPT3H	5	nucleus; nucleolus; transcription from RNA polymerase II promoter; DNA-dependent transcription, initiation; protein heterodimerization activity;

Genes shared at least 2 KEGG pathways with TAF13 (count: 0)

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Region: chr1:109605121..109618624 View in gBrowse