ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Gene Report

Basic Info

Approved Symbol	PSPC1
Symbol Alias	PSP1, FLJ10955
Approved Name	paraspeckle component 1
Location	13q11
Position	chr13:20248896-20357142, -
External Links	HGNC: 20320 Entrez Gene: 55269 Ensembl: ENSG00000121390 UCSC: uc001uml.2
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	Mapped by significant region

Gene related studies (count: 0)

Gene related SNPs (count: 0)

Gene related CNVs (count: 0)

Gene related other variant (count: 0)

Gene related regions (count: 1)

Region Name	Position	No. of Studies (significant/non-significant/trend)
13q12.11	chr13:19500000-23300000	1 (1/0/0)

Gene related GO terms (count: 11)

GO terms by PBA (with statistical significance of FDR<0.05) (count: 0)

GO terms by database search (count: 11)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0005730	nucleolus	Cellular Component		243
GO:0005634	nucleus	Cellular Component		770
GO:0006351	transcription, DNA-dependent	Biological Process		247
GO:0005737	cytoplasm	Cellular Component		690
GO:0016363	nuclear matrix	Cellular Component		16
GO:0006355	regulation of transcription, DNA-dependent	Biological Process		158
GO:0042382	paraspeckles	Cellular Component		1
GO:0016607	nuclear speck	Cellular Component		34
GO:0000166	nucleotide binding	Molecular Function		73
GO:0005515	protein binding	Molecular Function	IPI[16169070]	910
GO:0003723	RNA binding	Molecular Function		104

Gene related KEGG pathways (count: 0)

Genes shared at least 5 GO terms with PSPC1 (count: 59)

Gene Symbol	Pathway Count	Pathway List
SETD1A	8	nucleolus; nucleus; transcription, DNA-dependent; regulation of transcription, DNA-dependent; nuclear speck; nucleotide binding; protein binding; RNA binding;
RBM4	7	nucleolus; nucleus; cytoplasm; nuclear speck; nucleotide binding; protein binding; RNA binding;
ATXN1	6	nucleolus; nucleus; transcription, DNA-dependent; cytoplasm; nuclear matrix; protein binding;
DAXX	6	nucleolus; nucleus; transcription, DNA-dependent; cytoplasm; regulation of transcription, DNA-dependent; protein binding;
FLII	6	nucleolus; nucleus; transcription, DNA-dependent; cytoplasm; regulation of transcription, DNA-dependent; protein binding;
FUS	6	nucleolus; nucleus; cytoplasm; nucleotide binding; protein binding; RNA binding;
HNRNPA2B1	6	nucleolus; nucleus; cytoplasm; nucleotide binding; protein binding; RNA binding;
HNRNPH1	6	nucleolus; nucleus; cytoplasm; nucleotide binding; protein binding; RNA binding;
MEN1	6	nucleolus; nucleus; transcription, DNA-dependent; cytoplasm; nuclear matrix; protein binding;
NOL8	6	nucleolus; nucleus; cytoplasm; nucleotide binding; protein binding; RNA binding;
U2AF1	6	nucleolus; nucleus; nuclear speck; nucleotide binding; protein binding; RNA binding;
APBB1	6	nucleus; transcription, DNA-dependent; cytoplasm; regulation of transcription, DNA-dependent; nuclear speck; protein binding;
IGHMBP2	6	nucleus; transcription, DNA-dependent; cytoplasm; regulation of transcription, DNA-dependent; protein binding; RNA binding;
ALKBH8	5	nucleolus; nucleus; cytoplasm; protein binding; RNA binding;
ATXN2	5	nucleolus; nucleus; cytoplasm; protein binding; RNA binding;
BCLAF1	5	nucleolus; nucleus; transcription, DNA-dependent; cytoplasm; protein binding;
CDCA7L	5	nucleolus; nucleus; transcription, DNA-dependent; cytoplasm; regulation of transcription, DNA-dependent;
CHD1L	5	nucleolus; nucleus; cytoplasm; nucleotide binding; protein binding;
DDX54	5	nucleolus; nucleus; transcription, DNA-dependent; regulation of transcription, DNA-dependent; RNA binding;
DPF2	5	nucleolus; nucleus; transcription, DNA-dependent; cytoplasm; regulation of transcription, DNA-dependent;
EFTUD2	5	nucleolus; nucleus; cytoplasm; nuclear speck; protein binding;
HINFP	5	nucleolus; nucleus; transcription, DNA-dependent; regulation of transcription, DNA-dependent; protein binding;
HNRNPA1	5	nucleolus; nucleus; cytoplasm; nucleotide binding; RNA binding;
HOXB1	5	nucleolus; nucleus; transcription, DNA-dependent; cytoplasm; regulation of transcription, DNA-dependent;
INO80E	5	nucleolus; nucleus; transcription, DNA-dependent; regulation of transcription, DNA-dependent; protein binding;
MAPK1	5	nucleolus; nucleus; transcription, DNA-dependent; cytoplasm; protein binding;
MPHOSPH6	5	nucleolus; nucleus; cytoplasm; protein binding; RNA binding;
NUMA1	5	nucleolus; nucleus; cytoplasm; nuclear matrix; protein binding;
PDCD4	5	nucleolus; nucleus; cytoplasm; protein binding; RNA binding;
POU2F3	5	nucleolus; nucleus; transcription, DNA-dependent; cytoplasm; protein binding;
RBM14	5	nucleolus; nucleus; nucleotide binding; protein binding; RNA binding;
RCHY1	5	nucleolus; nucleus; cytoplasm; nuclear speck; protein binding;
RFWD2	5	nucleolus; nucleus; cytoplasm; nuclear speck; protein binding;
RPS6KA4	5	nucleolus; nucleus; cytoplasm; regulation of transcription, DNA-dependent; protein binding;
RRP8	5	nucleolus; nucleus; transcription, DNA-dependent; cytoplasm; protein binding;
SAP18	5	nucleolus; nucleus; transcription, DNA-dependent; cytoplasm; protein binding;
SCAF8	5	nucleolus; nucleus; nuclear matrix; nucleotide binding; RNA binding;
SF1	5	nucleolus; nucleus; transcription, DNA-dependent; regulation of transcription, DNA-dependent; RNA binding;
SSRP1	5	nucleolus; nucleus; cytoplasm; regulation of transcription, DNA-dependent; protein binding;
TARDBP	5	nucleolus; nucleus; nucleotide binding; protein binding; RNA binding;
TCF25	5	nucleolus; nucleus; transcription, DNA-dependent; cytoplasm; protein binding;
XRCC5	5	nucleolus; nucleus; transcription, DNA-dependent; cytoplasm; protein binding;
ZFR	5	nucleolus; nucleus; cytoplasm; protein binding; RNA binding;
ZNF263	5	nucleolus; nucleus; transcription, DNA-dependent; cytoplasm; regulation of transcription, DNA-dependent;
ZNF74	5	nucleolus; nucleus; transcription, DNA-dependent; regulation of transcription, DNA-dependent; RNA binding;
ZNF77	5	nucleolus; nucleus; transcription, DNA-dependent; cytoplasm; regulation of transcription, DNA-dependent;
CELF1	5	nucleus; cytoplasm; nucleotide binding; protein binding; RNA binding;
CNOT6	5	nucleus; transcription, DNA-dependent; regulation of transcription, DNA-dependent; protein binding; RNA binding;
CTNND1	5	nucleus; transcription, DNA-dependent; cytoplasm; regulation of transcription, DNA-dependent; protein binding;
CTNND2	5	nucleus; transcription, DNA-dependent; cytoplasm; regulation of transcription, DNA-dependent; protein binding;
HABP4	5	nucleus; transcription, DNA-dependent; cytoplasm; regulation of transcription, DNA-dependent; protein binding;
IGF2BP3	5	nucleus; cytoplasm; nucleotide binding; protein binding; RNA binding;
LPXN	5	nucleus; transcription, DNA-dependent; cytoplasm; regulation of transcription, DNA-dependent; protein binding;
PTPN14	5	nucleus; transcription, DNA-dependent; cytoplasm; regulation of transcription, DNA-dependent; protein binding;
RBFOX1	5	nucleus; cytoplasm; nucleotide binding; protein binding; RNA binding;
SCAI	5	nucleus; transcription, DNA-dependent; cytoplasm; regulation of transcription, DNA-dependent; protein binding;
SMNDC1	5	nucleus; cytoplasm; nuclear speck; protein binding; RNA binding;
TERF2IP	5	nucleus; transcription, DNA-dependent; cytoplasm; regulation of transcription, DNA-dependent; protein binding;
TRIM22	5	nucleus; transcription, DNA-dependent; cytoplasm; regulation of transcription, DNA-dependent; nuclear speck;

Genes shared at least 2 KEGG pathways with PSPC1 (count: 0)

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Region: chr13:20248896..20357142 View in gBrowse