ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Gene Report

Basic Info

Approved Symbol	SMNDC1
Symbol Alias	SPF30, SMNR, TDRD16C
Approved Name	survival motor neuron domain containing 1
Name Alias	"splicing factor 30, survival of motor neuron-related", "tudor domain containing 16C"
Location	10q23
Position	chr10:112050488-112064709, -1
External Links	HGNC: 16900 Entrez Gene: 10285 Ensembl: ENSG00000119953 UCSC: uc001kzc.4
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	Mapped by PBA pathway

Gene related studies (count: 0)

Gene related SNPs (count: 0)

Gene related CNVs (count: 0)

Gene related other variant (count: 0)

Gene related regions (count: 0)

Gene related GO terms (count: 12)

GO terms by PBA (with statistical significance of FDR<0.05) (count: 1)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0005681	spliceosomal complex	cellular component	IEA	43

GO terms by database search (count: 11)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0006397	mRNA processing	biological process	IEA	53
GO:0015030	Cajal body	cellular component	IEA	13
GO:0005515	protein binding	molecular function	IPI[15494309]	1015
GO:0008380	RNA splicing	biological process	TAS[9731529]	70
GO:0000375	RNA splicing, via transesterification reactions	biological process	TAS[9731529]	12
GO:0016607	nuclear speck	cellular component	IEA	40
GO:0005634	nucleus	cellular component	TAS[9817934]	877
GO:0003723	RNA binding	molecular function	IEA	115
GO:0006915	apoptotic process	biological process	IEA	127
GO:0005737	cytoplasm	cellular component	IEA	781
GO:0006917	induction of apoptosis	biological process	TAS[9817934]	35

Gene related KEGG pathways (count: 0)

Genes shared at least 5 GO terms with SMNDC1 (count: 38)

Gene Symbol	Pathway Count	Pathway List
GEMIN2	8	mRNA processing; Cajal body; protein binding; RNA splicing; RNA splicing, via transesterification reactions; nucleus; cytoplasm; spliceosomal complex;
U2AF1	8	mRNA processing; Cajal body; protein binding; RNA splicing; nuclear speck; nucleus; RNA binding; spliceosomal complex;
EFTUD2	8	mRNA processing; Cajal body; protein binding; RNA splicing; nuclear speck; nucleus; cytoplasm; spliceosomal complex;
HNRNPA2B1	7	mRNA processing; protein binding; RNA splicing; nucleus; RNA binding; cytoplasm; spliceosomal complex;
SF3A3	7	mRNA processing; protein binding; RNA splicing; RNA splicing, via transesterification reactions; nuclear speck; nucleus; spliceosomal complex;
RBM4	7	mRNA processing; protein binding; RNA splicing; nuclear speck; nucleus; RNA binding; cytoplasm;
PRPF4	7	Cajal body; protein binding; RNA splicing; RNA splicing, via transesterification reactions; nuclear speck; nucleus; spliceosomal complex;
PRPF6	7	protein binding; RNA splicing; RNA splicing, via transesterification reactions; nuclear speck; nucleus; RNA binding; spliceosomal complex;
PRPF8	6	mRNA processing; protein binding; RNA splicing; RNA splicing, via transesterification reactions; nuclear speck; RNA binding;
RBFOX1	6	mRNA processing; protein binding; RNA splicing; nucleus; RNA binding; cytoplasm;
HNRNPA1	6	mRNA processing; RNA splicing; nucleus; RNA binding; cytoplasm; spliceosomal complex;
SF3B4	6	mRNA processing; protein binding; RNA splicing; RNA splicing, via transesterification reactions; RNA binding; spliceosomal complex;
SF3A1	6	mRNA processing; protein binding; RNA splicing; nucleus; RNA binding; spliceosomal complex;
RNPS1	6	protein binding; RNA splicing; nuclear speck; nucleus; RNA binding; cytoplasm;
NSRP1	5	mRNA processing; protein binding; RNA splicing; nuclear speck; nucleus;
HSPA8	5	mRNA processing; protein binding; RNA splicing; nucleus; spliceosomal complex;
SCAF8	5	mRNA processing; RNA splicing; nucleus; RNA binding; spliceosomal complex;
PRPF18	5	mRNA processing; RNA splicing; nuclear speck; nucleus; spliceosomal complex;
BCAS2	5	mRNA processing; protein binding; RNA splicing; RNA splicing, via transesterification reactions; spliceosomal complex;
CDK12	5	mRNA processing; protein binding; RNA splicing; nuclear speck; nucleus;
NCBP1	5	mRNA processing; protein binding; RNA splicing; nucleus; RNA binding;
SNRPG	5	mRNA processing; protein binding; RNA splicing; RNA binding; spliceosomal complex;
U2AF2	5	mRNA processing; protein binding; RNA splicing; RNA binding; spliceosomal complex;
CELF1	5	mRNA processing; protein binding; nucleus; RNA binding; cytoplasm;
CPSF7	5	mRNA processing; protein binding; RNA splicing; nucleus; RNA binding;
CD2BP2	5	protein binding; RNA splicing; nuclear speck; nucleus; cytoplasm;
APBB1	5	protein binding; nuclear speck; nucleus; apoptotic process; cytoplasm;
NEK6	5	protein binding; nuclear speck; nucleus; apoptotic process; cytoplasm;
MAPK1	5	protein binding; nucleus; apoptotic process; cytoplasm; induction of apoptosis;
HNRNPH1	5	protein binding; RNA splicing; nucleus; RNA binding; cytoplasm;
PSPC1	5	protein binding; nuclear speck; nucleus; RNA binding; cytoplasm;
DAXX	5	protein binding; nucleus; apoptotic process; cytoplasm; induction of apoptosis;
BNIP3	5	protein binding; nucleus; apoptotic process; cytoplasm; induction of apoptosis;
WWOX	5	protein binding; nucleus; apoptotic process; cytoplasm; induction of apoptosis;
DHX8	5	protein binding; RNA splicing; nucleus; RNA binding; spliceosomal complex;
FUS	5	protein binding; RNA splicing; nucleus; RNA binding; cytoplasm;
PDCD4	5	protein binding; nucleus; RNA binding; apoptotic process; cytoplasm;
SLU7	5	RNA splicing, via transesterification reactions; nuclear speck; nucleus; cytoplasm; spliceosomal complex;

Genes shared at least 2 KEGG pathways with SMNDC1 (count: 0)

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Region: chr10:112050488..112064709 View in gBrowse