ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Gene Report

Basic Info

Approved Symbol	RPL13
Symbol Alias	D16S444E, BBC1, L13
Approved Name	ribosomal protein L13
Location	16q24.3
Position	chr16:89627056-89630950, +
External Links	HGNC: 10303 Entrez Gene: 6137 Ensembl: ENSG00000167526 UCSC: uc002fnm.1
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	Mapped by significant region

Gene related studies (count: 0)

Gene related SNPs (count: 0)

Gene related CNVs (count: 0)

Gene related other variant (count: 0)

Gene related regions (count: 1)

Region Name	Position	No. of Studies (significant/non-significant/trend)
16q23.1-24.3	chr16:74100000-90354753	1 (1/0/0)

Gene related GO terms (count: 19)

GO terms by PBA (with statistical significance of FDR<0.05) (count: 0)

GO terms by database search (count: 19)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Biological Process		16
GO:0003735	structural constituent of ribosome	Molecular Function	NAS[12962325]	24
GO:0003723	RNA binding	Molecular Function	TAS[9582194]	104
GO:0005829	cytosol	Cellular Component		447
GO:0005515	protein binding	Molecular Function	IPI[17474147]	910
GO:0016032	viral reproduction	Biological Process		57
GO:0016070	RNA metabolic process	Biological Process		46
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	Biological Process		18
GO:0010467	gene expression	Biological Process		140
GO:0006414	translational elongation	Biological Process		16
GO:0006415	translational termination	Biological Process		13
GO:0006412	translation	Biological Process	NAS[12962325]	42
GO:0006413	translational initiation	Biological Process		14
GO:0022626	cytosolic ribosome	Cellular Component	TAS[9582194]	1
GO:0044267	cellular protein metabolic process	Biological Process		64
GO:0019083	viral transcription	Biological Process		13
GO:0022625	cytosolic large ribosomal subunit	Cellular Component	IDA[12962325]	7
GO:0016071	mRNA metabolic process	Biological Process		34
GO:0019058	viral infectious cycle	Biological Process		15

Gene related KEGG pathways (count: 1)

ID	Name	No. of Genes in ADHDgene	Brief Description
hsa03010	Ribosome	14

Genes shared at least 5 GO terms with RPL13 (count: 40)

Gene Symbol	Pathway Count	Pathway List
RPL14	18	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; structural constituent of ribosome; RNA binding; cytosol; protein binding; viral reproduction; RNA metabolic process; SRP-dependent cotranslational protein targeting to membrane; gene expression; translational elongation; translational termination; translation; translational initiation; cellular protein metabolic process; viral transcription; cytosolic large ribosomal subunit; mRNA metabolic process; viral infectious cycle;
RPL12	17	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; structural constituent of ribosome; RNA binding; cytosol; viral reproduction; RNA metabolic process; SRP-dependent cotranslational protein targeting to membrane; gene expression; translational elongation; translational termination; translation; translational initiation; cellular protein metabolic process; viral transcription; cytosolic large ribosomal subunit; mRNA metabolic process; viral infectious cycle;
RPL37	17	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; structural constituent of ribosome; RNA binding; cytosol; viral reproduction; RNA metabolic process; SRP-dependent cotranslational protein targeting to membrane; gene expression; translational elongation; translational termination; translation; translational initiation; cellular protein metabolic process; viral transcription; cytosolic large ribosomal subunit; mRNA metabolic process; viral infectious cycle;
RPL38	17	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; structural constituent of ribosome; RNA binding; cytosol; viral reproduction; RNA metabolic process; SRP-dependent cotranslational protein targeting to membrane; gene expression; translational elongation; translational termination; translation; translational initiation; cellular protein metabolic process; viral transcription; cytosolic large ribosomal subunit; mRNA metabolic process; viral infectious cycle;
FAU	16	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; structural constituent of ribosome; RNA binding; cytosol; viral reproduction; RNA metabolic process; SRP-dependent cotranslational protein targeting to membrane; gene expression; translational elongation; translational termination; translation; translational initiation; cellular protein metabolic process; viral transcription; mRNA metabolic process; viral infectious cycle;
RPL35	16	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; structural constituent of ribosome; cytosol; viral reproduction; RNA metabolic process; SRP-dependent cotranslational protein targeting to membrane; gene expression; translational elongation; translational termination; translation; translational initiation; cellular protein metabolic process; viral transcription; cytosolic large ribosomal subunit; mRNA metabolic process; viral infectious cycle;
RPL37A	16	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; structural constituent of ribosome; cytosol; viral reproduction; RNA metabolic process; SRP-dependent cotranslational protein targeting to membrane; gene expression; translational elongation; translational termination; translation; translational initiation; cellular protein metabolic process; viral transcription; cytosolic large ribosomal subunit; mRNA metabolic process; viral infectious cycle;
RPS15A	16	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; structural constituent of ribosome; RNA binding; cytosol; viral reproduction; RNA metabolic process; SRP-dependent cotranslational protein targeting to membrane; gene expression; translational elongation; translational termination; translation; translational initiation; cellular protein metabolic process; viral transcription; mRNA metabolic process; viral infectious cycle;
RPS25	16	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; structural constituent of ribosome; RNA binding; cytosol; viral reproduction; RNA metabolic process; SRP-dependent cotranslational protein targeting to membrane; gene expression; translational elongation; translational termination; translation; translational initiation; cellular protein metabolic process; viral transcription; mRNA metabolic process; viral infectious cycle;
RPS3	16	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; structural constituent of ribosome; cytosol; protein binding; viral reproduction; RNA metabolic process; SRP-dependent cotranslational protein targeting to membrane; gene expression; translational elongation; translational termination; translation; translational initiation; cellular protein metabolic process; viral transcription; mRNA metabolic process; viral infectious cycle;
RPS9	16	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; structural constituent of ribosome; cytosol; protein binding; viral reproduction; RNA metabolic process; SRP-dependent cotranslational protein targeting to membrane; gene expression; translational elongation; translational termination; translation; translational initiation; cellular protein metabolic process; viral transcription; mRNA metabolic process; viral infectious cycle;
RPS12	15	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; structural constituent of ribosome; cytosol; viral reproduction; RNA metabolic process; SRP-dependent cotranslational protein targeting to membrane; gene expression; translational elongation; translational termination; translation; translational initiation; cellular protein metabolic process; viral transcription; mRNA metabolic process; viral infectious cycle;
NCBP1	8	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; RNA binding; cytosol; protein binding; viral reproduction; RNA metabolic process; gene expression; mRNA metabolic process;
XPO1	8	RNA binding; cytosol; protein binding; viral reproduction; RNA metabolic process; gene expression; mRNA metabolic process; viral infectious cycle;
SMG1	6	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; cytosol; protein binding; RNA metabolic process; gene expression; mRNA metabolic process;
SMG7	6	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; cytosol; protein binding; RNA metabolic process; gene expression; mRNA metabolic process;
CNOT6	6	RNA binding; cytosol; protein binding; RNA metabolic process; gene expression; mRNA metabolic process;
DDX6	6	RNA binding; cytosol; protein binding; RNA metabolic process; gene expression; mRNA metabolic process;
LSM4	6	RNA binding; cytosol; protein binding; RNA metabolic process; gene expression; mRNA metabolic process;
PATL1	6	RNA binding; cytosol; protein binding; RNA metabolic process; gene expression; mRNA metabolic process;
EEF1D	6	cytosol; protein binding; gene expression; translational elongation; translation; cellular protein metabolic process;
EEF1G	6	cytosol; protein binding; gene expression; translational elongation; translation; cellular protein metabolic process;
EIF2B1	6	cytosol; protein binding; gene expression; translation; translational initiation; cellular protein metabolic process;
PSMB7	6	cytosol; protein binding; viral reproduction; RNA metabolic process; gene expression; mRNA metabolic process;
PSMC3	6	cytosol; protein binding; viral reproduction; RNA metabolic process; gene expression; mRNA metabolic process;
PSMD5	6	cytosol; protein binding; viral reproduction; RNA metabolic process; gene expression; mRNA metabolic process;
PSMD7	6	cytosol; protein binding; viral reproduction; RNA metabolic process; gene expression; mRNA metabolic process;
UBB	6	cytosol; protein binding; viral reproduction; RNA metabolic process; gene expression; mRNA metabolic process;
UBC	6	cytosol; protein binding; viral reproduction; RNA metabolic process; gene expression; mRNA metabolic process;
SNRPD1	5	RNA binding; cytosol; protein binding; RNA metabolic process; gene expression;
SNRPG	5	RNA binding; cytosol; protein binding; RNA metabolic process; gene expression;
DCPS	5	cytosol; protein binding; RNA metabolic process; gene expression; mRNA metabolic process;
HSPA8	5	cytosol; protein binding; RNA metabolic process; gene expression; mRNA metabolic process;
PSMA8	5	cytosol; viral reproduction; RNA metabolic process; gene expression; mRNA metabolic process;
PSME1	5	cytosol; viral reproduction; RNA metabolic process; gene expression; mRNA metabolic process;
PSME2	5	cytosol; viral reproduction; RNA metabolic process; gene expression; mRNA metabolic process;
RAN	5	cytosol; protein binding; viral reproduction; gene expression; viral infectious cycle;
RQCD1	5	cytosol; protein binding; RNA metabolic process; gene expression; mRNA metabolic process;
SRP19	5	cytosol; SRP-dependent cotranslational protein targeting to membrane; gene expression; translation; cellular protein metabolic process;
SEC61B	5	protein binding; SRP-dependent cotranslational protein targeting to membrane; gene expression; translation; cellular protein metabolic process;

Genes shared at least 2 KEGG pathways with RPL13 (count: 0)

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Region: chr16:89627056..89630950 View in gBrowse