ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Gene Report

Basic Info

Approved Symbol	RPL38
Symbol Alias	L38
Approved Name	ribosomal protein L38
Location	17q25.1
Position	chr17:72199721-72206676, +
External Links	HGNC: 10349 Entrez Gene: 6169 Ensembl: ENSG00000172809 UCSC: uc002jka.2
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	Mapped by CNV

Gene related studies (count: 0)

Gene related SNPs (count: 0)

Gene related CNVs (count: 2)

ID	Location	Size	Band	Type	Inheritance
CNV_Jarick[2012]_38	chr17:69439887-70135450 (NCBI36 / hg18)	695564	17q25.1	dup
CNV_Lesch[2011]_8	chr17:69250000-70180000 (NCBI Build 35 (hg17))	930000	17q25.1	Duplication	Maternal (affected)

Gene related other variant (count: 0)

Gene related regions (count: 0)

Gene related GO terms (count: 20)

GO terms by PBA (with statistical significance of FDR<0.05) (count: 0)

GO terms by database search (count: 20)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0019058	viral infectious cycle	Biological Process		15
GO:0019083	viral transcription	Biological Process		13
GO:0022625	cytosolic large ribosomal subunit	Cellular Component	IDA[12962325]	7
GO:0042474	middle ear morphogenesis	Biological Process		4
GO:0044267	cellular protein metabolic process	Biological Process		64
GO:0006415	translational termination	Biological Process		13
GO:0006414	translational elongation	Biological Process		16
GO:0007605	sensory perception of sound	Biological Process		31
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	Biological Process		18
GO:0016032	viral reproduction	Biological Process		57
GO:0010467	gene expression	Biological Process		140
GO:0016071	mRNA metabolic process	Biological Process		34
GO:0016070	RNA metabolic process	Biological Process		46
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Biological Process		16
GO:0003723	RNA binding	Molecular Function	TAS[9375793]	104
GO:0001503	ossification	Biological Process		9
GO:0005829	cytosol	Cellular Component		447
GO:0003735	structural constituent of ribosome	Molecular Function	NAS[12962325]	24
GO:0006413	translational initiation	Biological Process		14
GO:0006412	translation	Biological Process	NAS[12962325]	42

Gene related KEGG pathways (count: 1)

ID	Name	No. of Genes in ADHDgene	Brief Description
hsa03010	Ribosome	14

Genes shared at least 5 GO terms with RPL38 (count: 33)

Gene Symbol	Pathway Count	Pathway List
RPL12	17	viral infectious cycle; viral transcription; cytosolic large ribosomal subunit; cellular protein metabolic process; translational termination; translational elongation; SRP-dependent cotranslational protein targeting to membrane; viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; RNA binding; cytosol; structural constituent of ribosome; translational initiation; translation;
RPL13	17	viral infectious cycle; viral transcription; cytosolic large ribosomal subunit; cellular protein metabolic process; translational termination; translational elongation; SRP-dependent cotranslational protein targeting to membrane; viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; RNA binding; cytosol; structural constituent of ribosome; translational initiation; translation;
RPL14	17	viral infectious cycle; viral transcription; cytosolic large ribosomal subunit; cellular protein metabolic process; translational termination; translational elongation; SRP-dependent cotranslational protein targeting to membrane; viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; RNA binding; cytosol; structural constituent of ribosome; translational initiation; translation;
RPL37	17	viral infectious cycle; viral transcription; cytosolic large ribosomal subunit; cellular protein metabolic process; translational termination; translational elongation; SRP-dependent cotranslational protein targeting to membrane; viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; RNA binding; cytosol; structural constituent of ribosome; translational initiation; translation;
FAU	16	viral infectious cycle; viral transcription; cellular protein metabolic process; translational termination; translational elongation; SRP-dependent cotranslational protein targeting to membrane; viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; RNA binding; cytosol; structural constituent of ribosome; translational initiation; translation;
RPL35	16	viral infectious cycle; viral transcription; cytosolic large ribosomal subunit; cellular protein metabolic process; translational termination; translational elongation; SRP-dependent cotranslational protein targeting to membrane; viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; cytosol; structural constituent of ribosome; translational initiation; translation;
RPL37A	16	viral infectious cycle; viral transcription; cytosolic large ribosomal subunit; cellular protein metabolic process; translational termination; translational elongation; SRP-dependent cotranslational protein targeting to membrane; viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; cytosol; structural constituent of ribosome; translational initiation; translation;
RPS15A	16	viral infectious cycle; viral transcription; cellular protein metabolic process; translational termination; translational elongation; SRP-dependent cotranslational protein targeting to membrane; viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; RNA binding; cytosol; structural constituent of ribosome; translational initiation; translation;
RPS25	16	viral infectious cycle; viral transcription; cellular protein metabolic process; translational termination; translational elongation; SRP-dependent cotranslational protein targeting to membrane; viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; RNA binding; cytosol; structural constituent of ribosome; translational initiation; translation;
RPS12	15	viral infectious cycle; viral transcription; cellular protein metabolic process; translational termination; translational elongation; SRP-dependent cotranslational protein targeting to membrane; viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; cytosol; structural constituent of ribosome; translational initiation; translation;
RPS3	15	viral infectious cycle; viral transcription; cellular protein metabolic process; translational termination; translational elongation; SRP-dependent cotranslational protein targeting to membrane; viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; cytosol; structural constituent of ribosome; translational initiation; translation;
RPS9	15	viral infectious cycle; viral transcription; cellular protein metabolic process; translational termination; translational elongation; SRP-dependent cotranslational protein targeting to membrane; viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; cytosol; structural constituent of ribosome; translational initiation; translation;
XPO1	7	viral infectious cycle; viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; RNA binding; cytosol;
NCBP1	7	viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; RNA binding; cytosol;
EEF1D	5	cellular protein metabolic process; translational elongation; gene expression; cytosol; translation;
EEF1G	5	cellular protein metabolic process; translational elongation; gene expression; cytosol; translation;
EIF2B1	5	cellular protein metabolic process; gene expression; cytosol; translational initiation; translation;
SRP19	5	cellular protein metabolic process; SRP-dependent cotranslational protein targeting to membrane; gene expression; cytosol; translation;
PSMA8	5	viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; cytosol;
PSMB7	5	viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; cytosol;
PSMC3	5	viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; cytosol;
PSMD5	5	viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; cytosol;
PSMD7	5	viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; cytosol;
PSME1	5	viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; cytosol;
PSME2	5	viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; cytosol;
UBB	5	viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; cytosol;
UBC	5	viral reproduction; gene expression; mRNA metabolic process; RNA metabolic process; cytosol;
CNOT6	5	gene expression; mRNA metabolic process; RNA metabolic process; RNA binding; cytosol;
DDX6	5	gene expression; mRNA metabolic process; RNA metabolic process; RNA binding; cytosol;
LSM4	5	gene expression; mRNA metabolic process; RNA metabolic process; RNA binding; cytosol;
PATL1	5	gene expression; mRNA metabolic process; RNA metabolic process; RNA binding; cytosol;
SMG1	5	gene expression; mRNA metabolic process; RNA metabolic process; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; cytosol;
SMG7	5	gene expression; mRNA metabolic process; RNA metabolic process; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; cytosol;

Genes shared at least 2 KEGG pathways with RPL38 (count: 0)

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Region: chr17:72199721..72206676 View in gBrowse