ADHDgene Database
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

Gene Report

Basic Info
Approved Symbol SLC5A7
Symbol Alias hCHT, CHT1, CHT
Approved Name solute carrier family 5 (choline transporter), member 7
Location 2q12
Position chr2:108602979-108630450, +
External Links HGNC: 14025
Entrez Gene: 60482
Ensembl: ENSG00000115665
UCSC: uc002tdv.2
No. of Studies 1 (significant: 1; non-significant: 0; trend: 0)
Source Literature-origin; Mapped by LD-proxy; Mapped by literature SNP

Gene related studies (count: 1)
Reference Statistical Values/Author Comments Result of Statistical Analysis
English BA, 2009 Omnibus tests:for Combined subtype, P-value=0.008, R2 =0.048, OR=2.25 under an additive model; P-value=0.008, R2 =0.069, OR=2.68, P-value=0.086 under a dominant model. All of the haplotype tests for either the ADHD diagnosis or the Inattentive subtype were non-significant. In contrast, the omnibus tests yielded a significant association with the Combined subtype under an additive model and a trend towards an association under a dominant model with the haplotype comprising both Ile89Val and 3' SNP minor alleles showing the strongest associations. Significant

Gene related SNPs (count: 6)

Literature-origin SNPs (count: 2)

LD-proxies (count: 4)

Gene related CNVs (count: 0)

Gene related other variant (count: 0)

Gene related regions (count: 0)

Gene related GO terms (count: 12)

GO terms by PBA (with statistical significance of FDR<0.05) (count: 0)

GO terms by database search (count: 12)

Gene related KEGG pathways (count: 0)

Genes shared at least 5 GO terms with SLC5A7 (count: 6)

Genes shared at least 2 KEGG pathways with SLC5A7 (count: 0)

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Region: chr2:108602979..108630450 View in gBrowse
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