ADHDgene Database
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Keyword:
Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

Gene Report

Basic Info
Approved Symbol PRTG
Symbol Alias FLJ25756, IGDCC5
Approved Name protogenin
Previous Name protogenin homolog (Gallus gallus)
Name Alias immunoglobulin superfamily, DCC subclass, member 5
Location 15q21.3
Position chr15:55903738-56035177, -
External Links HGNC: 26373
Entrez Gene: 283659
Ensembl: ENSG00000166450
UCSC: uc002adg.2
No. of Studies 1 (significant: 1; non-significant: 0; trend: 0)
Source Literature-origin; Mapped by LD-proxy; Mapped by literature SNP

Gene related studies (count: 1)
Reference Statistical Values/Author Comments Result of Statistical Analysis
Wigg KG, 2008 haplotype AA P-value=0.007, X2 (df=1)=7.155; haplotype GC P-value=0.023, X2 (df=1)=5.208; P-value=0.033, X2 (df=3)=8.7482 in global chi-square test; P-value=0.026, chi-squared test on 2 df for haplotypes with frequency >10%=7.2969 of rs7165971 and rs12591646; haplotype AAC P-value=0.017, X2 (df=1)=5.670; P-value=0.018, X2 (df=6) =15.258 in global chi-square test; P-value=0.007, chi-squared test on 3 df for haplotypes with frequency >10%=12.051 of rs2414424, rs3985768 and rs1011061; showed significant association with ADHD Significant

Gene related SNPs (count: 83)

Literature-origin SNPs (count: 20)

LD-proxies (count: 63)


Gene related CNVs (count: 0)

Gene related other variant (count: 0)

Gene related regions (count: 0)

Gene related GO terms (count: 2)

GO terms by PBA (with statistical significance of FDR<0.05) (count: 0)

GO terms by database search (count: 2)


Gene related KEGG pathways (count: 0)

Genes shared at least 5 GO terms with PRTG (count: 0)

Genes shared at least 2 KEGG pathways with PRTG (count: 0)

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Region: chr15:55903738..56035177 View in gBrowse
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Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014