ADHDgene Database

SNP Report

Basic Info

Name	rs9920546 dbSNP Ensembl
Location	Chr15:55946732(Fwd)
Variant Alleles	C/T
Ancestral Allele	C
Functional Annotation	downstream_gene_variant; intron_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000561465) intron_variant(ENST00000389286)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Wigg KG, 2008	A/G		TDT P-value=0.47, X²=0.521 TDT P-value=0.47, X²=0.521	no evidence for association no evidence for association	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
PRTG	protogenin	15q21.3	1(1/0/0)

SNPs in LD with rs9920546 (count: 33) View in gBrowse (chr15:55881745..56067866 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.


rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]
rs1011061	intron_variant	1(0/1/0)	1.0[CHB]; 1.0[JPT]
rs3985768	intron_variant	1(0/1/0)	1.0[CHB]; 1.0[JPT]
rs1550326	intron_variant	1(0/1/0)	1.0[CHB]
rs7162879	downstream_gene_variant; intron_variant	1(1/0/0)	0.931[YRI]
rs11852746	intron_variant	1(0/1/0)	1.0[CHB]; 1.0[JPT]
rs530798	3_prime_UTR_variant	1(0/1/0)	1.0[CHB]
rs934886	intron_variant	1(0/1/0)	1.0[CHB]; 1.0[JPT]

rs_ID	Functional Annotation	r²[population]
rs12899976	intron_variant	1.0[CHB]; 1.0[JPT]
rs12906451		1.0[JPT]
rs7179697	intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[YRI]
rs7181481		1.0[CHB]
rs8036481		1.0[CHB]; 1.0[JPT]
rs12438264		1.0[CHB]; 1.0[JPT]
rs16976472	downstream_gene_variant; intron_variant	0.931[YRI]
rs8027291	intron_variant	1.0[YRI]
rs4774217		1.0[CHB]
rs7162504	intron_variant	1.0[YRI]
rs12442771	downstream_gene_variant; intron_variant; upstream_gene_variant	0.836[CEU]
rs7182733	intron_variant; upstream_gene_variant	0.83[CEU]
rs491014	3_prime_UTR_variant	1.0[CHB]
rs12915565		1.0[JPT]
rs7175728		1.0[CHB]
rs8028880	intron_variant	1.0[CHB]; 1.0[JPT]
rs4774222	downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	1.0[CHB]; 1.0[JPT]
rs6493806	downstream_gene_variant; intron_variant	0.931[YRI]
rs11857254	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[CHB]
rs12914679		1.0[CHB]
rs8032175	intron_variant	1.0[YRI]
rs17238367		0.931[YRI]
rs6493814	downstream_gene_variant; intron_variant; upstream_gene_variant	0.836[CEU]
rs12909497	upstream_gene_variant	1.0[CHB]
rs16976467	downstream_gene_variant; intron_variant; upstream_gene_variant	0.918[LWK]; 1.0[YRI]
rs12908232	intron_variant	1.0[CHB]; 1.0[JPT]