ADHDgene Database

SNP Report

Basic Info

Name	rs3985768 dbSNP Ensembl
Location	chr15:55997544(Fwd)
Variant Alleles	A/T
Ancestral Allele	A
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000389286)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Wigg KG, 2008	T/A		TDT P-value=0.832, X²=0.045 TDT P-value=0.832, X²=0.045	no evidence for association no evidence for association	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
PRTG	protogenin	15q21.3	1(1/0/0)

SNPs in LD with rs3985768 (count: 14) View in gBrowse (chr15:55881745..56067866 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs12899976	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs4774222	downstream_gene_variant; intron_variant	0.957[CEU]; 1.0[CHB]; 1.0[JPT]
rs12914679		1.0[CHB]
rs491014	3_prime_UTR_variant	1.0[CHB]
rs12915565		1.0[JPT]
rs12909497	upstream_gene_variant	1.0[CHB]
rs7181481		1.0[CHB]
rs8036481		1.0[CHB]; 1.0[JPT]
rs7175728		1.0[CHB]
rs12438264		1.0[CHB]; 1.0[JPT]
rs8028880	intron_variant	0.959[CEU]; 1.0[CHB]; 1.0[JPT]
rs12906451		1.0[JPT]
rs12908232	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs4774217		1.0[CHB]