SNP Report

Basic Info
Name |
rs11854213
dbSNP
Ensembl
|
Location |
chr15:55970041(Fwd) |
Variant Alleles |
A/G |
Ancestral Allele |
A |
Functional Annotation |
downstream_gene_variant; synonymous_variant; upstream_gene_variant.
|
Consequence to Transcript |
downstream_gene_variant(ENST00000559842) synonymous_variant(ENST00000389286) upstream_gene_variant(ENST00000561155; ENST00000561465) |
No. of Studies |
1 (significant: 0; non-significant: 1; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 32)

rs_ID |
Functional Annotation |
r2[population] |
rs7163167
|
upstream_gene_variant |
0.903[CHB]; 0.833[CHD]
|
rs7171318
|
downstream_gene_variant; intron_variant |
0.906[CHB]; 0.909[JPT]
|
rs9920246
|
downstream_gene_variant; intron_variant |
0.821[CHB]; 0.909[JPT]
|
rs4377101
|
intron_variant |
0.854[CHB]; 0.813[CHD]
|
rs12442771
|
downstream_gene_variant; intron_variant |
0.806[CHB]
|
rs2414427
|
intron_variant |
0.863[CHB]
|
rs12903822
|
intron_variant |
0.863[CHB]; 0.865[CHD]; 0.867[JPT]
|
rs2414431
|
downstream_gene_variant; intron_variant |
0.854[CHB]; 0.813[CHD]
|
rs7181471
|
|
0.814[CHB]
|
rs9920076
|
downstream_gene_variant; intron_variant |
0.823[CHB]; 0.909[JPT]
|
rs6493809
|
intron_variant |
0.902[CHB]; 0.813[CHD]
|
rs2414426
|
intron_variant |
0.863[CHB]
|
rs7182733
|
intron_variant |
0.806[CHB]
|
rs8037136
|
downstream_gene_variant; intron_variant |
0.854[CHB]
|
rs6493814
|
downstream_gene_variant; intron_variant |
0.806[CHB]
|
rs2118781
|
downstream_gene_variant; intron_variant; upstream_gene_variant |
1.0[CEU]; 1.0[TSI]; 1.0[CHB]; 1.0[CHD]; 0.953[JPT]; 1.0[GIH]; 0.865[MEX]
|
rs12373006
|
downstream_gene_variant; intron_variant; upstream_gene_variant |
0.952[CHB]; 0.88[CHD]; 0.909[JPT]
|
rs1814329
|
downstream_gene_variant |
0.812[CHB]
|
rs1014551
|
intron_variant |
0.828[CEU]; 1.0[ASW]; 0.939[GIH]; 0.823[LWK]; 0.865[MEX]; 1.0[YRI]
|
rs12591246
|
intron_variant |
0.812[CHB]
|
rs7359255
|
|
0.812[CHB]
|
rs4774802
|
intron_variant |
0.855[CHB]
|
rs7181212
|
intron_variant |
0.841[CHB]
|
rs16976450
|
intron_variant |
0.863[CHB]; 0.909[JPT]
|
rs8025445
|
downstream_gene_variant; intron_variant |
1.0[CHB]; 0.86[CHD]; 0.953[JPT]
|
rs2414433
|
|
0.812[CHB]
|
rs10851589
|
intron_variant |
0.906[CHB]; 0.86[JPT]
|
rs2008336
|
intron_variant |
0.855[CHB]
|
rs16976472
|
downstream_gene_variant; intron_variant |
0.906[CHB]
|
rs10518817
|
intron_variant |
0.906[CHB]; 0.909[JPT]
|
rs7178379
|
3_prime_UTR_variant; intron_variant |
0.906[CHB]; 0.86[JPT]
|
rs572531
|
downstream_gene_variant; intron_variant |
0.826[JPT]
|