ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs3027407 dbSNP Ensembl
Location chrX:43604841(Fwd)
Variant Alleles A/G
Ancestral Allele A
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000338702)
downstream_gene_variant(ENST00000490604; ENST00000542639)
No. of Studies 3 (significant: 2; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 3)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Hawi, Z., 2012 G:A G P-value=0.2489, X2=1.33, OR=1.28, 95% CI=0.84-1.9...... P-value=0.2489, X2=1.33, OR=1.28, 95% CI=0.84-1.92 More... The marker did not show significant association with ADHD. The marker did not show significant association with ADHD. Non-significant
Guan L, 2009 single SNP association analyses: Nominal P-value=0.012, Empi...... single SNP association analyses: Nominal P-value=0.012, Empirical P-value=0.017 for ADHD; Nominal P-value=0.018, Empirical P-value=0.034 for ADHD-I More... achieve nominal and empirical significance for ADHD and ADHD...... achieve nominal and empirical significance for ADHD and ADHD-I More... Significant
Brookes K, 2006 A/G UNPHASED TDT P-value=0.0253 UNPHASED TDT P-value=0.0253 significant association was observed in UNPHASED analysis significant association was observed in UNPHASED analysis Significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs3027407 (count: 34) View in gBrowse (chrX:43438662..43612708 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 34)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014