ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs3788862 dbSNP Ensembl
Location chrX:43517364(Fwd)
Variant Alleles A/G
Ancestral Allele A
Functional Annotation intron_variant; nc_transcript_variant.
Consequence to Transcript intron_variant(ENST00000338702; ENST00000497485; ENST00000542639)
nc_transcript_variant(ENST00000497485)
No. of Studies 1 (significant: 1; non-significant: 0; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Liu, L., 2011 A TDT P-value=0.172 in all ADHD, P-value=0.023 in male ADHD, P...... TDT P-value=0.172 in all ADHD, P-value=0.023 in male ADHD, P-value=0.144 in female ADHD; P-value=0.479 in all ADHD-I, P-value=0.162 in male ADHD-I, P-value=0.285 in female ADHD-I; P-value=0.562 in all ADHD-C, P-value=0.302 in male ADHD-C, P-value=0.273 in female ADHD-C; Nominal P-value=0.056, Empirical P-value=0.123, X2=3.667 in ADHD-HI Trios; Nominal P-value=0.034, Empirical P-value=0.068, X2=4.481; Logistic Regression, P-value=0.694, OR=0.979; P-value<0.001, OR=0.982 after controlling for potentially confounding factors like age; P-value<0.001, OR=0.219 after controlling for potentially confounding factors like gender More... No biased transmission of any allele of any of the five eval...... No biased transmission of any allele of any of the five evaluated polymorphisms was observed for the entire sample of ADHD, ADHD-I, or ADHD-C. We only found biased transmission of these SNPs in the ADHD-HI subgroup. No association was found for ADHD females or subtypes. In male ADHD trios, the A allele of rs3788862 was over-transmitted, and for ADHD subtypes, we also found the same associations in males with ADHD-HI as were seen in the analysis of the entire ADHD-HI sample. The results showed that there was no different genotype distribution of any SNP after controlling for potentially confounding factors including gender and age. More... Significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs3788862 (count: 28) View in gBrowse (chrX:43473433..43601142 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 28)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014