ADHDgene Database
  • Hot Results
  • Quick Search
Keyword:
Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs1979572 dbSNP Ensembl
Location chr17:28511978(Fwd)
Variant Alleles G/A
Ancestral Allele A
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant; nc_transcript_variant; NMD_transcript_variant; non_coding_exon_variant; synonymous_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000394826; ENST00000475652)
downstream_gene_variant(ENST00000577289; ENST00000580103)
nc_transcript_variant(ENST00000540900)
NMD_transcript_variant(ENST00000394826; ENST00000475652)
non_coding_exon_variant(ENST00000540900)
synonymous_variant(ENST00000247026)
No. of Studies 1 (significant: 1; non-significant: 0; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Nyman ES, 2007 Logistic regression for single markers: adjusted for sex: P-...... Logistic regression for single markers: adjusted for sex: P-value=0.0258, OR=0.54, 95%CI=0.32-0.93 for 12vs.11; Males: P-value=0.0264, OR=0.43, 95%CI=0.20-0.91 for 12vs.22 More... nominally associated, but the results were considered inconc...... nominally associated, but the results were considered inconclusive because the effect was seen only for heterozygotes, and no risk (or protective) allele could be identified. More... Significant

SNP related genes (count: 1)

Literature-origin genes (count: 0)

Genes from other sources Help (count: 1)


SNPs in LD with rs1979572 (count: 80) View in gBrowse (chr17:28320473..28532013 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 80)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014