ADHDgene Database

SNP Report

Basic Info

Name	rs4470197 dbSNP Ensembl
Location	Chr17:28464474(Fwd)
Variant Alleles	T/C
Ancestral Allele	C
Functional Annotation	NMD_transcript_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000394826; ENST00000475652; ENST00000584154; ENST00000589608; ENST00000584317) intron_variant(ENST00000467446; ENST00000475652; ENST00000394826; ENST00000584154; ENST00000588614; ENST00000581048; ENST00000580103; ENST00000589608; ENST00000585881; ENST00000540900; ENST00000583301; ENST00000584317; ENST00000247026; ENST00000577289) nc_transcript_variant(ENST00000467446; ENST00000581048; ENST00000540900; ENST00000583301; ENST00000577289)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location
NSRP1	nuclear speckle splicing regulatory protein 1	17q11.2

SNPs in LD with rs4470197 (count: 7) View in gBrowse (chr17:28464474..28538715 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs4583306	intron_variant; upstream_gene_variant	1(1/0/0)	0.921[JPT]
rs140701	intron_variant; upstream_gene_variant	3(1/2/0)	0.92[JPT]
rs1979572	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant; synonymous_variant	1(1/0/0)	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs4325622	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(1/0/0)	0.927[CEU]; 1.0[CHB]; 1.0[JPT]
rs3813034	3_prime_UTR_variant; downstream_gene_variant	4(0/4/0)	0.961[CEU]; 1.0[CHB]; 1.0[JPT]
rs1042173	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant	1(0/1/0)	0.961[CEU]; 1.0[CHB]; 1.0[JPT]
rs11080121	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(1/0/0)	0.922[CEU]; 1.0[CHB]; 1.0[JPT]