ADHDgene Database

SNP Report

Basic Info

Name	rs3794808 dbSNP Ensembl
Location	Chr17:28531793(Fwd)
Variant Alleles	C/T
Ancestral Allele	C
Functional Annotation	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000579221) intron_variant(ENST00000579221; ENST00000261707; ENST00000401766; ENST00000581633; ENST00000394821) nc_transcript_variant(ENST00000581633) upstream_gene_variant(ENST00000578609)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
SLC6A4	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	17q11.2	25(13/12/0)

SNPs in LD with rs3794808 (count: 7) View in gBrowse (chr17:28511978..28538715 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs140701	intron_variant; upstream_gene_variant	3(1/2/0)	0.96[CEU]; 0.806[CHB]; 1.0[CHD]; 0.955[GIH]; 1.0[JPT]; 0.954[MEX]; 0.978[TSI]
rs1042173	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant	1(0/1/0)	1.0[CHD]; 0.92[JPT]; 0.845[TSI]
rs11080121	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(1/0/0)	0.848[CEU]; 0.92[JPT]
rs4583306	intron_variant; upstream_gene_variant	1(1/0/0)	1.0[CEU]; 0.849[CHB]; 0.954[GIH]; 1.0[JPT]; 0.826[MEX]; 0.956[TSI]
rs4325622	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(1/0/0)	0.92[JPT]
rs1979572	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant; synonymous_variant	1(1/0/0)	0.92[JPT]
rs3813034	3_prime_UTR_variant; downstream_gene_variant	4(0/4/0)	1.0[CHD]; 0.92[JPT]; 0.822[MEX]; 0.842[TSI]