ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs1800887 dbSNP Ensembl
Location Chr16:55733589(Fwd)
Variant Alleles T/C
Ancestral Allele C
Functional Annotation intron_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000414754; ENST00000567238; ENST00000379906; ENST00000561820; ENST00000219833; ENST00000566163; ENST00000568943)
upstream_gene_variant(ENST00000574918)
No. of Studies 2 (significant: 0; non-significant: 2; trend: 0)
Source Literature-origin

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Sengupta, S. M., 2012 T/C P-value=0.25, Z statistic (allele 1)=1.16 P-value=0.25, Z statistic (allele 1)=1.16 No significant association was found in this study. No significant association was found in this study. Non-significant
Hawi, Z., 2012 T:C T P-value=0.0763, X2=3.14, OR=1.33, 95% CI=0.97-1.8...... P-value=0.0763, X2=3.14, OR=1.33, 95% CI=0.97-1.83 More... The marker did not show significant association with ADHD. The marker did not show significant association with ADHD. Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs1800887 (count: 20) View in gBrowse (chr16:55717483..55778536 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 7)

LD-proxies (count: 13)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014