ADHDgene Database

SNP Report

Basic Info

Name	rs6499773 dbSNP Ensembl
Location	Chr16:55739006(Fwd)
Variant Alleles	T/A
Ancestral Allele	T
Functional Annotation	downstream_gene_variant; intron_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000379906; ENST00000568943; ENST00000566163; ENST00000414754; ENST00000567238) intron_variant(ENST00000561820; ENST00000219833; ENST00000574918)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
SLC6A2	solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	16q12.2	16(10/5/1)

SNPs in LD with rs6499773 (count: 8) View in gBrowse (chr16:55720458..55743767 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs8047672	downstream_gene_variant; intron_variant; upstream_gene_variant	2(1/1/0)	1.0[JPT]
rs10521329	intron_variant	2(0/2/0)	1.0[JPT]
rs16955708	downstream_gene_variant	1(0/1/0)	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs1800887	intron_variant; upstream_gene_variant	2(0/2/0)	1.0[JPT]
rs9930182	downstream_gene_variant	1(0/1/0)	1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs7188230	downstream_gene_variant	1(0/1/0)	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs8049681	intron_variant	1(0/1/0)	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.962[YRI]
rs15534	3_prime_UTR_variant; downstream_gene_variant; intron_variant	2(0/2/0)	0.94[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.908[LWK]; 0.878[MKK]; 0.946[TSI]; 1.0[YRI]