ADHDgene Database
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs6039806 dbSNP Ensembl
Location chr20:10258654(Fwd)
Variant Alleles C/A
Ancestral Allele A
Functional Annotation intron_variant; nc_transcript_variant; non_coding_exon_variant.
Consequence to Transcript intron_variant(ENST00000254976; ENST00000304886; ENST00000421143; ENST00000430336; ENST00000453544)
nc_transcript_variant(ENST00000421143; ENST00000453544; ENST00000492814)
non_coding_exon_variant(ENST00000492814)
No. of Studies 3 (significant: 1; non-significant: 2; trend: 0)
Source Literature-origin

SNP related studies (count: 3)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Feng Y, 2005(b) C/A allelic TDT P-value=0.302, X2=1.067 in Irvine sam...... allelic TDT P-value=0.302, X2=1.067 in Irvine sample; allelic TDT P-value=0.005, X2=7.848 in Toronto sample; TDT P-value=0.493, X2(1df)=0.471 in the Toronto sample by Inattentive subtype; TDT P-value=0.346, X2(1df)=0.889 in the Toronto sample by Hyperactive/impulsive subtype; TDT P-value=0.007, X2(1df)=7.218 in the Toronto sample by Combined subtype More... there was significant evidence for biased transmission in th...... there was significant evidence for biased transmission in the Toronto sample; TDT test was not significant in the Irvine sample; the observed evidence for biased transmission was not significant in the inattentive or hyperactive/impulsive subtype, but significant in the combined subtype in the Toronto sample More... Significant
Ilott NE, 2010 QTDT AT P-value=0.96, X2=0, df=1, QTDT AW P-value...... QTDT AT P-value=0.96, X2=0, df=1, QTDT AW P-value=0.99, X2=0, df=1 at age 2; QTDT AT P-value=0.97, X2=0.08, df=1, QTDT AW P-value=0.52, X2=0.41, df=1 at age 3 More... no significant association no significant association Non-significant
Brookes K, 2006 A/C UNPHASED TDT P-value=0.555; WHAP TDT P-value=0.607 UNPHASED TDT P-value=0.555; WHAP TDT P-value=0.607 no significant association was observed no significant association was observed Non-significant

SNP related genes (count: 2)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 1)


SNPs in LD with rs6039806 (count: 2) View in gBrowse (chr20:10253082..10263576 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)