ADHDgene Database

SNP Report

Basic Info

Name	rs3008354 dbSNP Ensembl
Location	Chr10:135120646(Fwd)
Variant Alleles	T/C
Ancestral Allele	C
Functional Annotation	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000482278) intron_variant(ENST00000487796; ENST00000482278; ENST00000417178; ENST00000480198; ENST00000470829; ENST00000368563) nc_transcript_variant(ENST00000487796; ENST00000480198; ENST00000470829) upstream_gene_variant(ENST00000252936; ENST00000368554; ENST00000543663; ENST00000361518; ENST00000359035; ENST00000482153; ENST00000463816)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location
ZNF511	zinc finger protein 511	10q26.3
TUBGCP2	tubulin, gamma complex associated protein 2	10q26.3

SNPs in LD with rs3008354 (count: 5) View in gBrowse (chr10:135120646..135160950 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs4838721	intron_variant; nc_transcript_variant; upstream_gene_variant	1(1/0/0)	0.823[CHB]; 0.852[CHD]; 0.823[JPT]; 0.84[TSI]
rs12244716	downstream_gene_variant; intron_variant; upstream_gene_variant	1(0/1/0)	1.0[CEU]; 1.0[JPT]
rs11101694	intron_variant	1(0/1/0)	1.0[CEU]; 0.823[CHB]; 1.0[CHD]; 0.921[GIH]; 0.904[JPT]; 0.821[MEX]; 0.967[TSI]
rs2275723	3_prime_UTR_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	1(1/0/0)	0.852[CHD]
rs2298122	intron_variant; upstream_gene_variant	1(0/1/0)	1.0[CHB]; 1.0[CHD]; 0.904[JPT]; 0.851[TSI]