ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs12244716 dbSNP Ensembl
Location chr10:135128382(Fwd)
Variant Alleles G/C
Ancestral Allele C
Functional Annotation downstream_gene_variant; intron_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000359035; ENST00000361518; ENST00000463816; ENST00000482153)
intron_variant(ENST00000368554)
upstream_gene_variant(ENST00000482278)
No. of Studies 1 (significant: 0; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Laurin N, 2005 C/G allelic ETDT P-value=0.323, X2(1df)=0.976 allelic ETDT P-value=0.323, X2(1df)=0.976 TDT statistic was not significant TDT statistic was not significant Non-significant

SNP related genes (count: 2)

Literature-origin genes (count: 0)

Genes from other sources Help (count: 2)


SNPs in LD with rs12244716 (count: 15) View in gBrowse (chr10:135081754..135136072 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 15)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014