ADHDgene Database

SNP Report

Basic Info

Name	rs2275724 dbSNP Ensembl
Location	Chr10:135088741(Fwd)
Variant Alleles	C/T
Ancestral Allele	C
Functional Annotation	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000560135) downstream_gene_variant(ENST00000252936; ENST00000368562; ENST00000368563; ENST00000477923; ENST00000482278; ENST00000417178; ENST00000543663) intron_variant(ENST00000559180; ENST00000415217; ENST00000445355; ENST00000537099; ENST00000463298; ENST00000486609; ENST00000560135; ENST00000485491) nc_transcript_variant(ENST00000537099; ENST00000463298; ENST00000559180) upstream_gene_variant(ENST00000561175; ENST00000468964)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location
ADAM8	ADAM metallopeptidase domain 8	10q26.3
TUBGCP2	tubulin, gamma complex associated protein 2	10q26.3

SNPs in LD with rs2275724 (count: 4) View in gBrowse (chr10:135088741..135160950 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs4838721	intron_variant; nc_transcript_variant; upstream_gene_variant	1(1/0/0)	0.931[GIH]; 0.881[TSI]
rs11101694	intron_variant	1(0/1/0)	0.812[JPT]
rs2298122	intron_variant; upstream_gene_variant	1(0/1/0)	0.931[GIH]; 0.812[JPT]; 0.884[TSI]
rs12244716	downstream_gene_variant; intron_variant; upstream_gene_variant	1(0/1/0)	0.904[JPT]