ADHDgene Database

SNP Report

Basic Info

Name	rs1843812 dbSNP Ensembl
Location	Chr12:72367655(Fwd)
Variant Alleles	A/G
Ancestral Allele	G
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000333850)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
TPH2	tryptophan hydroxylase 2	12q15	10(7/3/0)

SNPs in LD with rs1843812 (count: 11) View in gBrowse (chr12:72348698..72405059 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs7954568	intron_variant	1(1/0/0)	1.0[CEU]; 1.0[CHB]
rs1386496	NMD_transcript_variant; intron_variant	2(0/2/0)	0.913[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[MEX]; 0.96[TSI]
rs1386497	intron_variant	2(1/1/0)	1.0[CEU]; 0.846[CHB]; 0.917[CHD]; 0.929[MEX]; 0.853[TSI]; 0.856[YRI]
rs4760814	intron_variant	1(0/1/0)	1.0[CEU]; 1.0[CHB]; 1.0[YRI]
rs1487276	intron_variant	1(1/0/0)	0.838[CEU]
rs1386494	NMD_transcript_variant; intron_variant	1(0/1/0)	0.913[CEU]; 1.0[CHB]; 0.815[YRI]
rs7963226	intron_variant	1(1/0/0)	1.0[ASW]; 1.0[CEU]; 0.846[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[LWK]; 1.0[MKK]; 0.96[TSI]; 1.0[YRI]
rs4760818	intron_variant	2(1/1/0)	0.834[ASW]; 1.0[CEU]; 0.823[CHB]; 0.935[GIH]; 1.0[MEX]; 0.891[MKK]; 0.856[YRI]
rs6582081	intron_variant	1(1/0/0)	0.913[CEU]; 0.846[CHB]; 1.0[CHD]; 1.0[GIH]; 0.859[MEX]; 0.96[TSI]
rs1843809	NMD_transcript_variant; intron_variant	5(3/2/0)	0.913[CEU]; 1.0[CHB]; 0.846[CHD]; 0.883[GIH]; 0.865[MEX]; 0.96[TSI]
rs1007023	intron_variant	1(1/0/0)	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[MEX]; 0.832[MKK]; 1.0[TSI]; 0.856[YRI]