SNP Report

Basic Info
Name |
rs1386497
dbSNP
Ensembl
|
Location |
chr12:72392290(Fwd) |
Variant Alleles |
C/A |
Ancestral Allele |
A |
Functional Annotation |
intron_variant.
|
Consequence to Transcript |
intron_variant(ENST00000333850) |
No. of Studies |
2 (significant: 1; non-significant: 1; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 2)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 16)

rs_ID |
Functional Annotation |
r2[population] |
rs10784942
|
intron_variant; nc_transcript_variant |
0.913[CEU]; 0.846[CHB]
|
rs2367899
|
intron_variant |
1.0[CEU]; 0.846[CHB]; 0.927[YRI]
|
rs10748189
|
intron_variant |
0.913[CEU]; 0.846[CHB]; 0.923[YRI]
|
rs10784944
|
downstream_gene_variant; intron_variant |
0.913[CEU]; 0.893[TSI]; 0.849[ASW]; 0.846[CHB]; 0.925[MEX]; 0.856[YRI]
|
rs1473473
|
intron_variant |
0.838[CEU]
|
rs1386489
|
intron_variant; nc_transcript_variant |
0.913[CEU]; 0.893[TSI]; 0.849[ASW]; 0.846[CHB]; 0.929[MEX]
|
rs4760749
|
intron_variant; nc_transcript_variant |
0.913[CEU]; 0.846[CHB]
|
rs1843812
|
intron_variant |
1.0[CEU]; 0.853[TSI]; 0.846[CHB]; 0.917[CHD]; 0.929[MEX]; 0.856[YRI]
|
rs990234
|
intron_variant |
0.913[CEU]; 0.848[YRI]
|
rs2046582
|
intron_variant |
1.0[CEU]; 0.846[CHB]; 1.0[YRI]
|
rs7299582
|
intron_variant; nc_transcript_variant; non_coding_exon_variant |
0.913[CEU]; 0.887[TSI]; 0.846[CHB]; 0.925[MEX]; 0.864[YRI]
|
rs7300490
|
intron_variant |
1.0[CEU]
|
rs4760751
|
intron_variant |
1.0[CEU]; 0.893[TSI]; 0.849[ASW]; 0.846[CHB]; 0.917[CHD]; 0.963[LWK]; 0.929[MEX]; 0.888[MKK]; 1.0[YRI]
|
rs7968346
|
intron_variant; nc_transcript_variant |
0.913[CEU]; 0.846[CHB]; 0.807[YRI]
|
rs1487281
|
intron_variant |
1.0[CEU]; 0.893[TSI]; 0.849[ASW]; 0.846[CHB]; 0.917[CHD]; 0.8[MEX]
|
rs1386490
|
intron_variant; nc_transcript_variant |
0.825[CEU]; 0.846[CHB]; 0.853[YRI]
|