ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs7208257 dbSNP Ensembl
Location Chr17:4620497(Fwd)
Variant Alleles C/T
Ancestral Allele T
Functional Annotation NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript NMD_transcript_variant(ENST00000574502; ENST00000576235)
downstream_gene_variant(ENST00000572782; ENST00000571791; ENST00000570718; ENST00000574888; ENST00000572497)
intron_variant(ENST00000381488; ENST00000574502; ENST00000571764; ENST00000572457; ENST00000573886; ENST00000346341; ENST00000571206; ENST00000575131; ENST00000269260; ENST00000570739; ENST00000575877; ENST00000576235; ENST00000574954; ENST00000412477; ENST00000571428)
nc_transcript_variant(ENST00000573886; ENST00000575131; ENST00000570739; ENST00000571764)
upstream_gene_variant(ENST00000577054)
No. of Studies 1 (significant: 1; non-significant: 0; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Brookes K, 2006 A/G UNPHASED TDT P-value=0.0043; WHAP TDT P-value=0.038 UNPHASED TDT P-value=0.0043; WHAP TDT P-value=0.038 significant association was observed in both UNPHASED and WH...... significant association was observed in both UNPHASED and WHAP analyses More... Significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs7208257 (count: 4) View in gBrowse (chr17:4577950..4620497 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 4)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014