SNP Report

Basic Info
Name |
rs1386488
dbSNP
Ensembl
|
Location |
chr12:72344618(Fwd) |
Variant Alleles |
C/A |
Ancestral Allele |
A |
Functional Annotation |
intron_variant; nc_transcript_variant.
|
Consequence to Transcript |
intron_variant(ENST00000333850; ENST00000546576) nc_transcript_variant(ENST00000546576) |
No. of Studies |
2 (significant: 0; non-significant: 2; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 2)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 19)

rs_ID |
Functional Annotation |
r2[population] |
rs12231731
|
intron_variant |
1.0[JPT]
|
rs1386489
|
intron_variant; nc_transcript_variant |
0.847[CEU]
|
rs10784944
|
downstream_gene_variant; intron_variant |
0.847[CEU]
|
rs7299582
|
intron_variant; nc_transcript_variant; non_coding_exon_variant |
0.847[CEU]
|
rs11179018
|
downstream_gene_variant; intron_variant |
1.0[JPT]
|
rs11179022
|
intron_variant |
1.0[JPT]
|
rs4760749
|
intron_variant; nc_transcript_variant |
0.847[CEU]
|
rs7978482
|
intron_variant |
0.85[CEU]; 0.97[TSI]; 0.843[CHB]; 0.823[JPT]; 0.804[GIH]
|
rs11179003
|
intron_variant; nc_transcript_variant |
1.0[JPT]
|
rs10784942
|
intron_variant; nc_transcript_variant |
0.847[CEU]
|
rs11179017
|
downstream_gene_variant; intron_variant |
1.0[JPT]
|
rs7968346
|
intron_variant; nc_transcript_variant |
0.847[CEU]
|
rs11179004
|
intron_variant; nc_transcript_variant |
1.0[JPT]
|
rs11179032
|
intron_variant |
1.0[JPT]
|
rs7300641
|
intron_variant |
0.85[CEU]; 0.97[TSI]; 0.843[CHB]; 0.823[JPT]; 0.804[GIH]
|
rs1843810
|
intron_variant |
0.85[CEU]; 0.843[CHB]; 0.823[JPT]
|
rs10879344
|
intron_variant; nc_transcript_variant |
1.0[JPT]
|
rs11179015
|
downstream_gene_variant; intron_variant |
1.0[JPT]
|
rs12231408
|
intron_variant |
1.0[JPT]
|