SNP Report

Basic Info
Name |
rs1386493
dbSNP
Ensembl
|
Location |
chr12:72355179(Fwd) |
Variant Alleles |
A/G |
Ancestral Allele |
G |
Functional Annotation |
intron_variant; nc_transcript_variant.
|
Consequence to Transcript |
intron_variant(ENST00000333850; ENST00000546576) nc_transcript_variant(ENST00000546576) |
No. of Studies |
5 (significant: 2; non-significant: 3; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 5)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 19)

rs_ID |
Functional Annotation |
r2[population] |
rs10879344
|
intron_variant; nc_transcript_variant |
1.0[JPT]
|
rs4760749
|
intron_variant; nc_transcript_variant |
0.847[CEU]
|
rs10784942
|
intron_variant; nc_transcript_variant |
0.847[CEU]; 0.813[YRI]
|
rs11179022
|
intron_variant |
1.0[JPT]
|
rs7299582
|
intron_variant; nc_transcript_variant; non_coding_exon_variant |
0.847[CEU]
|
rs1843810
|
intron_variant |
0.85[CEU]; 1.0[CHB]; 0.823[JPT]
|
rs10784944
|
downstream_gene_variant; intron_variant |
0.847[CEU]
|
rs12231731
|
intron_variant |
1.0[JPT]
|
rs11179018
|
downstream_gene_variant; intron_variant |
1.0[JPT]
|
rs11179004
|
intron_variant; nc_transcript_variant |
1.0[JPT]
|
rs11179003
|
intron_variant; nc_transcript_variant |
1.0[JPT]
|
rs7300641
|
intron_variant |
0.85[CEU]; 1.0[TSI]; 0.809[ASW]; 1.0[CHB]; 0.926[CHD]; 0.823[JPT]; 0.804[GIH]; 0.812[MEX]
|
rs12231408
|
intron_variant |
1.0[JPT]
|
rs11179032
|
intron_variant |
1.0[JPT]
|
rs7978482
|
intron_variant |
0.85[CEU]; 1.0[TSI]; 1.0[CHB]; 0.962[CHD]; 0.823[JPT]; 0.804[GIH]; 0.82[MEX]
|
rs11179017
|
downstream_gene_variant; intron_variant |
1.0[JPT]
|
rs11179015
|
downstream_gene_variant; intron_variant |
1.0[JPT]
|
rs7968346
|
intron_variant; nc_transcript_variant |
0.847[CEU]
|
rs1386489
|
intron_variant; nc_transcript_variant |
0.847[CEU]
|