ADHDgene Database

Gene Report

Basic Info

Approved Symbol	GALNT1
Symbol Alias	GalNAc-T1
Approved Name	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)
Name Alias	"protein-UDP acetylgalactosaminyltransferase 1"
Location	18q12.1
Position	chr18:33161081-33291798, 1
External Links	HGNC: 4123 Entrez Gene: 2589 Ensembl: ENSG00000141429 UCSC: uc002kzb.3
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	Mapped by significant region

Gene related studies (count: 0)

Gene related SNPs (count: 0)

Gene related CNVs (count: 0)

Gene related other variant (count: 0)

Gene related regions (count: 1)

Region Name	Position	No. of Studies (significant/non-significant/trend)
18q11.2-12.3	chr18:19000000-43500000	1 (1/0/0)

Gene related GO terms (count: 14)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0004653	polypeptide N-acetylgalactosaminyltransferase activity	molecular function	IDA[9295285]	4
GO:0005576	extracellular region	cellular component	IEA	267
GO:0048471	perinuclear region of cytoplasm	cellular component	IDA[12506059]	99
GO:0016021	integral to membrane	cellular component	IEA	932
GO:0018243	protein O-linked glycosylation via threonine	biological process	IDA[9295285]	1
GO:0018242	protein O-linked glycosylation via serine	biological process	IDA[9295285]	1
GO:0006493	protein O-linked glycosylation	biological process	TAS[9592121]	2
GO:0030145	manganese ion binding	molecular function	IDA[9295285]	11
GO:0005794	Golgi apparatus	cellular component	IDA[12506059]	174
GO:0000139	Golgi membrane	cellular component	TAS	106
GO:0032580	Golgi cisterna membrane	cellular component	IEA	21
GO:0016266	O-glycan processing	biological process	TAS	5
GO:0043687	post-translational protein modification	biological process	TAS	42
GO:0044267	cellular protein metabolic process	biological process	TAS	78

Gene related KEGG pathways (count: 2)

ID	Name	No. of Genes in ADHDgene	Brief Description
hsa01030	Glycan structures - biosynthesis 1	25
hsa00512	O-Glycan biosynthesis	5

Genes shared at least 5 GO terms with GALNT1 (count: 6)

Gene Symbol	Pathway Count	Pathway List
GALNT12	6	polypeptide N-acetylgalactosaminyltransferase activity; integral to membrane; Golgi membrane; O-glycan processing; post-translational protein modification; cellular protein metabolic process;
GALNT13	6	polypeptide N-acetylgalactosaminyltransferase activity; integral to membrane; Golgi membrane; O-glycan processing; post-translational protein modification; cellular protein metabolic process;
ST3GAL4	6	extracellular region; Golgi membrane; Golgi cisterna membrane; O-glycan processing; post-translational protein modification; cellular protein metabolic process;
B4GALT6	5	integral to membrane; Golgi membrane; Golgi cisterna membrane; post-translational protein modification; cellular protein metabolic process;
B4GALT4	5	integral to membrane; Golgi membrane; Golgi cisterna membrane; post-translational protein modification; cellular protein metabolic process;
B3GNT6	5	integral to membrane; Golgi membrane; O-glycan processing; post-translational protein modification; cellular protein metabolic process;

Genes shared at least 2 KEGG pathways with GALNT1 (count: 4)

Gene Symbol	Pathway Count	Pathway List
GALNT13	2	Glycan structures - biosynthesis 1; O-Glycan biosynthesis;
B3GNT6	2	Glycan structures - biosynthesis 1; O-Glycan biosynthesis;
WBSCR17	2	Glycan structures - biosynthesis 1; O-Glycan biosynthesis;
GALNT12	2	Glycan structures - biosynthesis 1; O-Glycan biosynthesis;

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Region: chr18:33161081..33291798 View in gBrowse