ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs7083920 dbSNP Ensembl
Location	Chr10:45071890(Fwd)
Variant Alleles	C/T
Ancestral Allele	T
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (b)	T:C		GLM P-value=1.80E-05, meta-analysis P-value=0.1134 GLM P-value=1.80E-05, meta-analysis P-value=0.1134	One of the top 100 SNPs from imputed IMAGE II dataset One of the top 100 SNPs from imputed IMAGE II dataset	Non-significant

SNP related genes (count: 0)

SNPs in LD with rs7083920 (count: 51) View in gBrowse (chr10:45059741..45126887 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 7)

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs11239157		1(0/1/0)	1.0[CEU]; 1.0[CHB]; 0.977[CHD]; 1.0[GIH]; 1.0[JPT]; 0.916[MEX]; 0.84[MKK]; 1.0[TSI]
rs1999774		1(0/1/0)	1.0[CEU]; 1.0[CHB]; 0.977[CHD]; 1.0[GIH]; 1.0[JPT]; 0.916[MEX]; 1.0[TSI]
rs10900075		1(0/1/0)	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 0.898[JPT]; 0.916[MEX]; 0.863[MKK]; 1.0[TSI]
rs1021055		1(0/1/0)	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.916[MEX]; 0.865[MKK]; 1.0[TSI]
rs7069381		1(0/1/0)	1.0[CEU]; 0.934[GIH]; 0.913[MEX]; 1.0[TSI]
rs2061971	intron_variant; nc_transcript_variant	1(0/1/0)	1.0[CEU]; 0.809[CHD]; 0.934[GIH]; 0.956[MEX]; 0.977[TSI]
rs899889		1(0/1/0)	0.96[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.916[MEX]; 0.865[MKK]; 1.0[TSI]

LD-proxies (count: 44)

rs_ID	Functional Annotation	r²[population]
rs749000		0.948[CHB]; 1.0[JPT]
rs11239141		1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.913[GIH]; 1.0[JPT]; 0.852[TSI]
rs10793546		0.92[CEU]
rs12243864		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs1585913		0.958[CEU]
rs1999775		0.955[CEU]
rs4350324	downstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs11239147		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs11239143		0.953[CEU]; 0.948[CHB]; 1.0[JPT]
rs994178		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs10160186		1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.913[GIH]; 1.0[JPT]; 0.852[TSI]
rs11239135		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs1383375	upstream_gene_variant	1.0[CEU]
rs11239142		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs11239177		0.961[CEU]; 0.913[MEX]; 0.932[TSI]
rs10900072		1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.913[GIH]; 1.0[JPT]; 0.872[MEX]; 0.872[TSI]
rs899890		1.0[CEU]; 0.934[CHB]; 0.942[JPT]
rs1904836		0.961[CEU]; 0.872[MEX]; 0.932[TSI]
rs11239139		0.96[CEU]; 1.0[CHB]; 1.0[CHD]; 0.913[GIH]; 1.0[JPT]; 0.852[TSI]
rs10159760		0.961[CEU]; 0.931[CHD]; 0.892[GIH]; 0.947[JPT]; 0.828[TSI]
rs10793547		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs10793544		1.0[CEU]; 0.809[CHD]; 0.871[GIH]; 0.852[TSI]
rs10900069		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs10047393		1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.913[GIH]; 1.0[JPT]; 0.913[MEX]; 0.872[TSI]
rs12254041		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs11239149		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs10793545		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs11239136		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs11239154		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs10047358		1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.913[GIH]; 1.0[JPT]; 0.852[TSI]
rs11239148		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs12242558		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs17408014		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs10793548		1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.913[GIH]; 1.0[JPT]; 0.852[TSI]
rs12244967		1.0[CEU]
rs10900070		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs1002589		0.961[CEU]; 0.809[GIH]; 0.91[TSI]
rs10900073		1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.913[GIH]; 1.0[JPT]; 0.872[MEX]; 0.872[TSI]
rs1904837		0.961[CEU]; 0.912[MEX]; 0.932[TSI]
rs989077		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs10159976		1.0[CEU]; 0.809[CHD]; 0.852[GIH]; 0.852[TSI]
rs11239145		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs10900068		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs11239151		1.0[CEU]; 1.0[CHB]; 0.939[JPT]