ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs2061971 dbSNP Ensembl
Location	Chr10:45089053(Fwd)
Variant Alleles	A/G
Ancestral Allele	G
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000456722) nc_transcript_variant(ENST00000456722)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (b)	A:G		GLM P-value=2.42E-05, meta-analysis P-value=0.06829 GLM P-value=2.42E-05, meta-analysis P-value=0.06829	One of the top 100 SNPs from imputed IMAGE II dataset One of the top 100 SNPs from imputed IMAGE II dataset	Non-significant

SNP related genes (count: 0)

SNPs in LD with rs2061971 (count: 51) View in gBrowse (chr10:45059741..45126887 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 7)

rs_ID	#studies(significant/non-significant/trend)	r²[population]

rs1021055	1(0/1/0)	1.0[CEU]; 0.809[CHD]; 0.934[GIH]; 0.873[MEX]; 0.977[TSI]
rs7083920	1(0/1/0)	1.0[CEU]; 0.809[CHD]; 0.934[GIH]; 0.956[MEX]; 0.977[TSI]
rs1999774	1(0/1/0)	1.0[CEU]; 0.933[GIH]; 0.873[MEX]; 0.977[TSI]
rs10900075	1(0/1/0)	1.0[CEU]; 0.809[CHD]; 0.934[GIH]; 0.873[MEX]; 0.977[TSI]
rs11239157	1(0/1/0)	1.0[CEU]; 0.934[GIH]; 0.873[MEX]; 0.977[TSI]
rs899889	1(0/1/0)	0.96[CEU]; 0.805[CHD]; 0.934[GIH]; 0.873[MEX]; 0.977[TSI]
rs7069381	1(0/1/0)	1.0[CEU]; 1.0[CHB]; 0.954[CHD]; 1.0[GIH]; 1.0[JPT]; 0.956[MEX]; 0.977[TSI]

LD-proxies (count: 44)

rs_ID	Functional Annotation	r²[population]
rs1002589		0.961[CEU]; 0.933[TSI]
rs11239149		1.0[CEU]
rs11239147		1.0[CEU]
rs12242558		1.0[CEU]
rs10793545		1.0[CEU]
rs989077		1.0[CEU]
rs11239141		1.0[CEU]; 0.809[CHD]; 0.843[GIH]; 0.872[TSI]
rs10159760		0.961[CEU]; 0.911[CHB]; 0.868[CHD]; 0.866[GIH]; 0.829[MEX]; 0.848[TSI]
rs11239154		1.0[CEU]
rs12254041		1.0[CEU]
rs11239143		0.953[CEU]
rs10159976		1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.867[GIH]; 1.0[JPT]; 0.829[MEX]; 0.872[TSI]
rs10900069		1.0[CEU]
rs10793548		1.0[CEU]; 0.809[CHD]; 0.843[GIH]; 0.829[MEX]; 0.872[TSI]
rs10047358		1.0[CEU]; 0.809[CHD]; 0.843[GIH]; 0.829[MEX]; 0.872[TSI]
rs1585913		0.958[CEU]
rs4350324	downstream_gene_variant	1.0[CEU]
rs11239135		1.0[CEU]
rs994178		1.0[CEU]
rs10047393		1.0[CEU]; 0.809[CHD]; 0.843[GIH]; 0.869[MEX]; 0.848[TSI]
rs12244967		1.0[CEU]; 0.954[CHB]; 1.0[JPT]; 0.881[YRI]
rs11239177		0.943[ASW]; 0.961[CEU]; 0.833[GIH]; 0.956[MEX]; 0.876[MKK]; 0.955[TSI]; 0.825[YRI]
rs10900068		1.0[CEU]
rs11239136		1.0[CEU]
rs11239145		1.0[CEU]
rs10793546		0.92[CEU]
rs11239142		1.0[CEU]
rs899890		1.0[CEU]
rs1383375	upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.887[YRI]
rs11239151		1.0[CEU]
rs12243864		1.0[CEU]
rs11239139		0.96[CEU]; 0.809[CHD]; 0.843[GIH]; 0.829[MEX]; 0.872[TSI]
rs7918194	upstream_gene_variant	0.871[MEX]
rs1999775		0.955[CEU]
rs10793547		1.0[CEU]
rs10900073		1.0[CEU]; 0.809[CHD]; 0.843[GIH]; 0.829[MEX]; 0.848[TSI]
rs1904836		0.961[CEU]; 0.833[GIH]; 0.829[MEX]; 0.955[TSI]
rs1904837		0.961[CEU]; 0.833[GIH]; 0.955[MEX]; 0.955[TSI]
rs10160186		1.0[CEU]; 0.809[CHD]; 0.843[GIH]; 0.829[MEX]; 0.872[TSI]
rs10900072		1.0[CEU]; 0.806[CHD]; 0.843[GIH]; 0.829[MEX]; 0.848[TSI]
rs10900070		1.0[CEU]
rs17408014		1.0[CEU]
rs11239148		1.0[CEU]
rs10793544		1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.888[GIH]; 1.0[JPT]; 0.829[MEX]; 0.872[TSI]