SNP Report
Basic Info
SNP related studies (count: 1)
SNP related genes (count: 2)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 18)
rs_ID |
Functional Annotation |
r2[population] |
rs11857139
|
NMD_transcript_variant; intron_variant; nc_transcript_variant |
1.0[CHB]; 1.0[JPT]
|
rs8042509
|
NMD_transcript_variant; intron_variant; nc_transcript_variant |
1.0[CHB]; 1.0[JPT]
|
rs4380011
|
NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs12440680
|
NMD_transcript_variant; intron_variant; nc_transcript_variant |
0.901[GIH]; 0.825[MEX]
|
rs17238297
|
NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs692690
|
NMD_transcript_variant; intron_variant; nc_transcript_variant |
0.926[ASW]; 0.948[GIH]; 0.893[LWK]; 0.889[TSI]
|
rs6493787
|
NMD_transcript_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant |
1.0[CHB]; 0.864[JPT]
|
rs687623
|
NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant |
1.0[ASW]; 0.901[CEU]; 1.0[CHB]; 0.864[CHD]; 0.924[GIH]; 1.0[JPT]; 1.0[MEX]; 0.81[MKK]; 0.886[TSI]; 1.0[YRI]
|
rs7167170
|
NMD_transcript_variant; intron_variant; nc_transcript_variant |
1.0[CHB]; 1.0[JPT]
|
rs8042996
|
NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant |
0.855[ASW]; 0.934[YRI]
|
rs11857862
|
NMD_transcript_variant; intron_variant; nc_transcript_variant |
1.0[CHB]; 1.0[JPT]
|
rs7167572
|
intron_variant; nc_transcript_variant |
1.0[CHB]
|
rs7174102
|
NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant |
1.0[CHB]; 1.0[JPT]
|
rs8043049
|
NMD_transcript_variant; intron_variant; nc_transcript_variant |
1.0[CHB]; 1.0[JPT]
|
rs8037376
|
NMD_transcript_variant; intron_variant; nc_transcript_variant |
1.0[CHB]; 1.0[JPT]
|
rs17819096
|
NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs17819108
|
NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs692646
|
NMD_transcript_variant; intron_variant; nc_transcript_variant |
0.926[ASW]; 0.906[CEU]; 0.869[GIH]; 1.0[MEX]; 1.0[TSI]
|