ADHDgene Database

SNP Report

Basic Info

Name	rs442745 dbSNP Ensembl
Location	Chr6:33382241(Fwd)
Variant Alleles	T/G/A/C
Ancestral Allele	T
Functional Annotation	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000495509; ENST00000487667) downstream_gene_variant(ENST00000462802; ENST00000374500; ENST00000488767; ENST00000428849; ENST00000459809; ENST00000428274; ENST00000488034; ENST00000494751; ENST00000427004; ENST00000479249; ENST00000492510; ENST00000482684; ENST00000465956; ENST00000440279; ENST00000374496; ENST00000374484; ENST00000488478; ENST00000487637; ENST00000414695; ENST00000453736; ENST00000422985; ENST00000441437; ENST00000418028; ENST00000442136; ENST00000414166; ENST00000374523) intron_variant(ENST00000495509; ENST00000374512; ENST00000374516; ENST00000486845; ENST00000487667) nc_transcript_variant(ENST00000486845) upstream_gene_variant(ENST00000427826; ENST00000479029)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location
PHF1	PHD finger protein 1	6p21.3
KIFC1	kinesin family member C1	6p21.32
CUTA	cutA divalent cation tolerance homolog (E. coli)	6p21.32

SNPs in LD with rs442745 (count: 1) View in gBrowse (chr6:33382241..33404064 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs10807124	intron_variant; nc_transcript_variant; upstream_gene_variant	2(0/2/0)	0.865[GIH]; 0.875[MEX]