SNP Report

Basic Info

SNP related studies (count: 2)

SNP related genes (count: 2)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 20)

rs_ID |
Functional Annotation |
r2[population] |
rs9380355
|
downstream_gene_variant |
0.817[CHD]; 0.865[GIH]; 0.915[MEX]
|
rs1755047
|
|
0.842[CHB]; 0.865[GIH]; 0.838[MEX]
|
rs9394145
|
intron_variant; missense_variant; nc_transcript_variant |
1.0[ASW]; 0.945[CEU]; 1.0[CHB]; 1.0[CHD]; 0.976[GIH]; 0.903[JPT]; 1.0[MEX]; 1.0[TSI]
|
rs1059231
|
downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant; synonymous_variant; upstream_gene_variant |
0.861[ASW]; 0.821[MEX]; 1.0[MKK]
|
rs465506
|
upstream_gene_variant |
0.825[GIH]; 0.875[MEX]
|
rs3130275
|
downstream_gene_variant |
0.861[ASW]; 0.875[MEX]
|
rs2239839
|
downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant |
0.861[ASW]; 0.827[MEX]; 1.0[MKK]
|
rs2282851
|
downstream_gene_variant; intron_variant; nc_transcript_variant |
0.861[ASW]; 0.827[MEX]; 1.0[MKK]
|
rs2772373
|
downstream_gene_variant |
0.886[GIH]; 0.838[MEX]
|
rs2772387
|
|
0.842[CHB]
|
rs3106191
|
downstream_gene_variant; intron_variant; nc_transcript_variant |
0.861[ASW]; 0.827[MEX]; 1.0[MKK]
|
rs461964
|
downstream_gene_variant; intron_variant; upstream_gene_variant |
0.825[GIH]; 0.875[MEX]
|
rs456993
|
upstream_gene_variant |
0.865[GIH]; 0.875[MEX]
|
rs442745
|
NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
0.865[GIH]; 0.875[MEX]
|
rs6914422
|
|
0.829[CHB]
|
rs465474
|
upstream_gene_variant |
0.865[GIH]; 0.875[MEX]
|
rs9380365
|
|
0.941[CHB]; 0.91[JPT]
|
rs9366824
|
|
0.829[CHB]
|
rs3130276
|
upstream_gene_variant |
0.814[GIH]; 0.875[MEX]
|
rs6942045
|
|
0.861[ASW]; 0.887[CEU]; 1.0[CHB]; 0.97[CHD]; 1.0[GIH]; 0.91[JPT]; 0.956[MEX]; 0.973[TSI]
|