ADHDgene Database

SNP Report

Basic Info

Name	rs3743204 dbSNP Ensembl
Location	Chr15:55790310(Fwd)
Variant Alleles	G/T
Ancestral Allele	T
Functional Annotation	NMD_transcript_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000524160; ENST00000522437) intron_variant(ENST00000380679; ENST00000524160; ENST00000568310; ENST00000448430; ENST00000457155; ENST00000348518; ENST00000321149; ENST00000522437; ENST00000519017; ENST00000565113) nc_transcript_variant(ENST00000568310; ENST00000519017; ENST00000565113)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Wigg KG, 2008	C/A		TDT P-value=0.151, X²=2.063 TDT P-value=0.151, X²=2.063	no evidence for association no evidence for association	Non-significant

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
DYX1C1	dyslexia susceptibility 1 candidate 1	15q21.1	1(0/1/0)

Approved Symbol	Approved Name	Location
DYX1C1-CCPG1	DYX1C1-CCPG1 readthrough (non-protein coding)	15q

SNPs in LD with rs3743204 (count: 4) View in gBrowse (chr15:55762237..55798599 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.


rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]
rs2007494	intron_variant; upstream_gene_variant	1(0/1/0)	0.898[CEU]

rs_ID	Functional Annotation	r²[population]
rs8040756	intron_variant	1.0[CHB]; 0.906[CHD]; 1.0[JPT]
rs7182524	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.816[JPT]
rs16976343	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.8[ASW]; 0.92[CHB]; 0.968[CHD]; 1.0[JPT]; 0.93[MKK]; 0.934[YRI]