ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs260461 dbSNP Ensembl
Location	Chr19:58770883(Fwd)
Variant Alleles	G/A
Ancestral Allele	G
Functional Annotation	3_prime_UTR_variant; NMD_transcript_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000596677) NMD_transcript_variant(ENST00000596677; ENST00000600029) intron_variant(ENST00000599227; ENST00000415203; ENST00000600044; ENST00000594384; ENST00000596652; ENST00000600220; ENST00000596929; ENST00000595981; ENST00000599953; ENST00000269829; ENST00000598880; ENST00000600029; ENST00000596825) nc_transcript_variant(ENST00000597230; ENST00000598880) non_coding_exon_variant(ENST00000597230)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Lasky-Su J, 2008			P-value=8.38E-06 under Dominant model for FBAT-PC all sympto...... P-value=8.38E-06 under Dominant model for FBAT-PC all symptoms More...	association finding with P-value association finding with P-value	Trend

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
ZNF544	zinc finger protein 544	19q13.43	1(0/0/1)

Genes from other sources (count: 0)

SNPs in LD with rs260461 (count: 13) View in gBrowse (chr19:58753937..58783027 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 13)

rs_ID	Functional Annotation	r²[population]
rs260452	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 0.815[JPT]
rs260457	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 0.815[JPT]
rs392644	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	0.855[CHB]; 0.975[CHD]
rs260456	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	0.905[CHB]; 0.907[CHD]; 0.815[JPT]
rs11881516	NMD_transcript_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	0.896[YRI]
rs2449632	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]
rs260454	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	0.905[CHB]; 0.908[CHD]; 0.815[JPT]
rs260486	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.905[CHB]; 0.815[JPT]
rs260453	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 0.815[JPT]
rs260484	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	0.905[CHB]; 0.887[CHD]; 0.815[JPT]
rs260462	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; intron_variant; missense_variant; nc_transcript_variant; upstream_gene_variant	1.0[CHB]; 1.0[CHD]
rs260468	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CHB]; 1.0[CHD]
rs439333	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CHB]