ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs2423487 dbSNP Ensembl
Location Chr20:10213095(Fwd)
Variant Alleles C/T
Ancestral Allele T
Functional Annotation intron_variant; nc_transcript_variant.
Consequence to Transcript intron_variant(ENST00000453544; ENST00000304886; ENST00000421143; ENST00000254976; ENST00000430336)
nc_transcript_variant(ENST00000453544; ENST00000421143)
No. of Studies 1 (significant: 1; non-significant: 0; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Brookes K, 2006 A/G UNPHASED TDT P-value=0.154; WHAP TDT P-value=0.048 UNPHASED TDT P-value=0.154; WHAP TDT P-value=0.048 significant association was observed in WHAP analysis significant association was observed in WHAP analysis Significant

SNP related genes (count: 2)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 1)


SNPs in LD with rs2423487 (count: 9) View in gBrowse (chr20:10206117..10230291 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 1)

LD-proxies (count: 8)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014