ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs2229126 dbSNP Ensembl
Location chr8:26627672(Fwd)
Variant Alleles T/A
Ancestral Allele T
Functional Annotation downstream_gene_variant; intron_variant; missense_variant; NMD_transcript_variant; upstream_gene_variant.
Polyphen Annotation: benign(ENST00000276393; ENST00000380573)
SIFT Annotation: tolerated(ENST00000276393; ENST00000380573)
Consequence to Transcript downstream_gene_variant(ENST00000518621)
intron_variant(ENST00000354550; ENST00000380581; ENST00000380582; ENST00000380586; ENST00000380587; ENST00000519096; ENST00000519229; ENST00000521711)
missense_variant(ENST00000276393; ENST00000380573)
NMD_transcript_variant(ENST00000519096; ENST00000521711)
upstream_gene_variant(ENST00000486251)
No. of Studies 1 (significant: 1; non-significant: 0; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Brookes K, 2006 A/T UNPHASED TDT P-value=0.15; WHAP TDT P-value=0.042 UNPHASED TDT P-value=0.15; WHAP TDT P-value=0.042 significant association was observed in WHAP analysis significant association was observed in WHAP analysis Significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs2229126 (count: 3) View in gBrowse (chr8:26616143..26662246 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014