ADHDgene Database

SNP Report

Basic Info

Name	rs1542479 dbSNP Ensembl
Location	Chr9:93373049(Fwd)
Variant Alleles	G/A
Ancestral Allele	G
Functional Annotation	3_prime_UTR_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000375765)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Reif, A., 2011	G/A		P-value=0.0905, OR (allele)=1.55 (A), 95% CI=0.93-2.59 in Ge...... P-value=0.0905, OR (allele)=1.55 (A), 95% CI=0.93-2.59 in German discovery sample; P-value=0.3378, OR (allele)=1.15 (G), 95% CI=0.87-1.51 in IMpACT replication sample; P-value=0.9958, OR (allele)=1.00 (A), 95% CI=0.79-1.27 in pooled data; PDT P-value=0.1779 for allele G in the family-based analysis More...	This SNP did not reach p<0.05 in the association test with a...... This SNP did not reach p<0.05 in the association test with aADHD. Replication in 1035 aADHD patients and 1381 controls from IMpACT did not show any significant SNP association. More...	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
DIRAS2	DIRAS family, GTP-binding RAS-like 2	9q22.32	1(1/0/0)

SNPs in LD with rs1542479 (count: 5) View in gBrowse (chr9:93297966..93404408 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.


rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]
rs2297354	intron_variant	1(0/1/0)	0.877[CHB]; 0.897[JPT]

rs_ID	Functional Annotation	r²[population]
rs16906728	intron_variant	1.0[JPT]
rs12685637	intron_variant; nc_transcript_variant	1.0[MEX]
rs12684569	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[MEX]
rs2297353	intron_variant	0.877[CHB]; 0.897[JPT]