ADHDgene Database

SNP Report

Basic Info

Name	rs129882 dbSNP Ensembl
Location	Chr9:136523669(Fwd)
Variant Alleles	C/T
Ancestral Allele	C
Functional Annotation	3_prime_UTR_variant; upstream_gene_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000393056) upstream_gene_variant(ENST00000425189)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Hawi, Z., 2012	C:T	C	P-value=0.2498, X²=1.32, OR=1.21, 95% CI=0.87-1.6...... P-value=0.2498, X²=1.32, OR=1.21, 95% CI=0.87-1.67 More...	The marker did not show significant association with ADHD. The marker did not show significant association with ADHD.	Non-significant

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
DBH	dopamine beta-hydroxylase (dopamine beta-monooxygenase)	9q34	20(11/9/0)

Approved Symbol	Approved Name	Location
DBH-AS1	DBH antisense RNA 1 [MODEL Refseq, miscRNA]	9q34.2
NCRNA00118	non-protein coding RNA 118	9q34.2

SNPs in LD with rs129882 (count: 3) View in gBrowse (chr9:136523669..136528721 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs129886	3_prime_UTR_variant; downstream_gene_variant	0.948[CEU]; 0.95[CHB]; 0.863[GIH]; 1.0[JPT]; 0.897[MEX]; 0.921[TSI]
rs129885	downstream_gene_variant; upstream_gene_variant	0.95[CHB]; 0.837[GIH]; 1.0[JPT]; 0.897[MEX]; 0.885[TSI]
rs129884	downstream_gene_variant; upstream_gene_variant	0.841[CEU]; 0.95[CHB]; 0.878[CHD]; 0.945[GIH]; 1.0[JPT]; 0.897[MEX]