ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs11030104 dbSNP Ensembl
Location chr11:27684517(Fwd)
Variant Alleles A/G
Ancestral Allele A
Functional Annotation downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000530313; ENST00000532965)
intron_variant(ENST00000314915; ENST00000356660; ENST00000395978; ENST00000395980; ENST00000395981; ENST00000395983; ENST00000395986; ENST00000418212; ENST00000420794; ENST00000438929; ENST00000499008; ENST00000499568; ENST00000500662; ENST00000501176; ENST00000502161; ENST00000525950; ENST00000530686; ENST00000530786; ENST00000530861; ENST00000532997; ENST00000533131; ENST00000533246; ENST00000584049)
nc_transcript_variant(ENST00000499008; ENST00000499568; ENST00000500662; ENST00000501176; ENST00000502161; ENST00000530686; ENST00000584049)
NMD_transcript_variant(ENST00000530786)
upstream_gene_variant(ENST00000439476; ENST00000501663; ENST00000525528)
No. of Studies 2 (significant: 1; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Lanktree M, 2008 G:A X2=4.79, P-value=0.029 in the family-based sample...... X2=4.79, P-value=0.029 in the family-based sample; X2=2.51, P-value=0.11, OR=1.48 in the case-control sample; X2=6.93, P-value=0.0085, OR=1.66 in the combined samples More... showed marginal significance in the family-based sample, and...... showed marginal significance in the family-based sample, and showed association in the combined samples More... Significant
Lee J, 2007 G/A G Allelic TDT P-value=0.464 for all transmissions, P-value=0.4...... Allelic TDT P-value=0.464 for all transmissions, P-value=0.484 for paternal transmissions, P-value=0.655 for maternal transmissions; quantitative analysis FBAT smallest P-value=0.208 for Parent rated inattention More... No significant evidence of biased transmission or relationsh...... No significant evidence of biased transmission or relationship between this allele and the two ADHD symptom dimensions or short-term and working memory scores More... Non-significant

SNP related genes (count: 2)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 1)


SNPs in LD with rs11030104 (count: 33) View in gBrowse (chr11:27541623..27733858 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 33)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014