ADHDgene Database

SNP Report

Basic Info

Name	rs10852934 dbSNP Ensembl
Location	Chr17:37782410(Fwd)
Variant Alleles	T/C
Ancestral Allele	C
Functional Annotation	downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000398554) upstream_gene_variant(ENST00000394267; ENST00000394265; ENST00000466381; ENST00000254079; ENST00000579000; ENST00000580772; ENST00000583446; ENST00000394271; ENST00000580825; ENST00000492037; ENST00000357165; ENST00000582680)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
PPP1R1B	protein phosphatase 1, regulatory (inhibitor) subunit 1B	17	1(0/1/0)

SNPs in LD with rs10852934 (count: 5) View in gBrowse (chr17:37781849..37828496 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs3764352	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.827[CEU]; 1.0[CHB]; 0.976[CHD]; 1.0[JPT]
rs879606	downstream_gene_variant; upstream_gene_variant	1(0/1/0)	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.966[GIH]; 1.0[JPT]; 0.978[LWK]; 0.948[MEX]; 1.0[MKK]; 1.0[TSI]; 1.0[YRI]
rs1053651	downstream_gene_variant; synonymous_variant; upstream_gene_variant	1(0/1/0)	0.868[CHB]; 0.835[CHD]; 0.822[JPT]
rs2952151	3_prime_UTR_variant; downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant	1(0/1/0)	0.822[JPT]
rs907094	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	1.0[CHB]; 0.976[CHD]; 1.0[JPT]