ADHDgene Database

SNP Report

Basic Info

Name	rs9633344 dbSNP Ensembl
Location	chr1:202566200(Fwd)
Variant Alleles	T/C
Ancestral Allele	C
Functional Annotation	downstream_gene_variant; intron_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000608999) intron_variant(ENST00000367267; ENST00000367268)
No. of Studies	1 (significant: 1; non-significant: 0; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Sanchez-Mora, C., 2012			P-value=0.059, Genotype12+22vs11: P-value=0.022, OR(95%CI)=1...... P-value=0.059, Genotype12+22vs11: P-value=0.022, OR(95%CI)=1.32(1.04¨C1.69); Genotypes22vs11+12: P-value=0.184, OR(95%CI)=1.24(0.90¨C1.70); allelic P-value=0,025, OR(95%CI)=1.21(1.02¨C1.42) More...	Nine SNPs located in five genes displayed nominal associatio...... Nine SNPs located in five genes displayed nominal associations in the comparison of ADHD children and controls More...	Significant

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
SYT2	synaptotagmin II	1q32.1	1(1/0/0)

Approved Symbol	Approved Name	Location
PPP1R12B	protein phosphatase 1, regulatory subunit 12B	1q32.1

SNPs in LD with rs9633344 (count: 11) View in gBrowse (chr1:202548822..202569877 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs6427958	3_prime_UTR_variant; downstream_gene_variant	0.952[CEU]; 0.936[JPT]; 0.96[YRI]
rs747640	3_prime_UTR_variant; downstream_gene_variant	0.905[CEU]
rs504261	downstream_gene_variant; synonymous_variant	1.0[CEU]; 0.894[CHB]; 0.939[JPT]
rs1040010	3_prime_UTR_variant; downstream_gene_variant	0.905[CEU]
rs4950859	3_prime_UTR_variant; downstream_gene_variant	0.905[CEU]
rs2362941	3_prime_UTR_variant; downstream_gene_variant	0.817[CEU]
rs6666325	intron_variant	1.0[CEU]; 0.891[CHB]; 0.937[JPT]; 0.924[YRI]
rs1467120	intron_variant; upstream_gene_variant	0.955[CEU]; 0.8[CHB]; 0.887[JPT]; 0.931[YRI]
rs907698	intron_variant; upstream_gene_variant	0.953[CEU]; 0.891[CHB]; 0.937[JPT]; 0.961[YRI]
rs10494834	downstream_gene_variant; intron_variant	1.0[CEU]; 0.879[JPT]; 1.0[YRI]
rs967677	intron_variant; nc_transcript_variant	0.817[CEU]