SNP Report

Basic Info
Name |
rs9633344
dbSNP
Ensembl
|
Location |
Chr1:202566200(Fwd) |
Variant Alleles |
T/C |
Ancestral Allele |
C |
Functional Annotation |
intron_variant.
|
Consequence to Transcript |
intron_variant(ENST00000367267; ENST00000367268) |
No. of Studies |
1 (significant: 1; non-significant: 0; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 11)

rs_ID |
Functional Annotation |
r2[population] |
rs907698
|
intron_variant; upstream_gene_variant |
0.953[CEU]; 0.891[CHB]; 0.937[JPT]; 0.961[YRI]
|
rs6666325
|
intron_variant |
1.0[CEU]; 0.891[CHB]; 0.937[JPT]; 0.924[YRI]
|
rs1040010
|
3_prime_UTR_variant; downstream_gene_variant |
0.905[CEU]
|
rs2362941
|
3_prime_UTR_variant; downstream_gene_variant |
0.817[CEU]
|
rs747640
|
3_prime_UTR_variant; downstream_gene_variant |
0.905[CEU]
|
rs4950859
|
3_prime_UTR_variant; downstream_gene_variant |
0.905[CEU]
|
rs6427958
|
3_prime_UTR_variant |
0.952[CEU]; 0.936[JPT]; 0.96[YRI]
|
rs1467120
|
intron_variant; upstream_gene_variant |
0.955[CEU]; 0.8[CHB]; 0.887[JPT]; 0.931[YRI]
|
rs504261
|
synonymous_variant |
1.0[CEU]; 0.894[CHB]; 0.939[JPT]
|
rs10494834
|
intron_variant |
1.0[CEU]; 0.879[JPT]; 1.0[YRI]
|
rs967677
|
intron_variant; nc_transcript_variant |
0.817[CEU]
|