ADHDgene Database

SNP Report

Basic Info

Name	rs9545424 dbSNP Ensembl
Location	Chr13:36383264(Fwd)
Variant Alleles	G/A
Ancestral Allele	A
Functional Annotation	intron_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000255448; ENST00000379893; ENST00000360631) upstream_gene_variant(ENST00000486239)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Havik, B., 2012			P-value=0.055, OR (95% CI)=0.75 (0.57-1.00) in the Norwegian...... P-value=0.055, OR (95% CI)=0.75 (0.57-1.00) in the Norwegian sample; P-value=0.134, OR (95% CI)=1.26 (1.02-1.55) in the German sample; P-value=0.798, OR (95% CI)=1.01 (0.86-1.20) in the merged sample More...	The marker did not show significant association with ADHD. The marker did not show significant association with ADHD.	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
DCLK1	doublecortin-like kinase 1	13q13.3	1(1/0/0)

SNPs in LD with rs9545424 (count: 39) View in gBrowse (chr13:36318804..36383264 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs7999483	intron_variant	1(0/1/0)	0.826[CEU]; 1.0[MEX]; 0.959[TSI]
rs9545297	downstream_gene_variant	1(0/1/0)	0.874[CEU]

rs_ID	Functional Annotation	r²[population]
rs9574529		0.872[CEU]
rs9574513		0.812[CEU]
rs9574512		0.82[CEU]
rs9574515		0.82[CEU]
rs1886549		0.82[CEU]
rs9574568	intron_variant	0.874[CEU]
rs7317552		0.82[CEU]
rs7992892		0.82[CEU]
rs9545423	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs9574510		0.82[CEU]
rs3803279	downstream_gene_variant	0.874[CEU]
rs11843701	downstream_gene_variant	0.874[CEU]
rs9574527		0.803[CEU]
rs9574511		0.819[CEU]
rs11843245		1.0[MEX]; 0.959[TSI]
rs1045696	3_prime_UTR_variant	1.0[CEU]; 1.0[MEX]; 0.959[TSI]
rs872060		0.82[CEU]
rs9565540		0.812[CEU]
rs9574516		0.82[CEU]
rs17052887	intron_variant; nc_transcript_variant	1.0[JPT]
rs7997939		0.82[CEU]
rs6563142		0.82[CEU]
rs12855118	intron_variant; upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 0.933[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[MEX]; 0.848[MKK]; 1.0[TSI]
rs9574528		0.819[CEU]
rs9574530		0.819[CEU]
rs9645963	intron_variant	0.812[JPT]
rs7326177	intron_variant; nc_transcript_variant	1.0[CEU]; 0.888[CHB]; 0.901[CHD]; 1.0[GIH]; 0.91[JPT]; 0.918[LWK]; 1.0[MEX]; 1.0[TSI]
rs6563147		0.82[CEU]
rs9574508		0.873[CEU]
rs9545221		0.82[CEU]
rs9646082	intron_variant; nc_transcript_variant	0.91[JPT]
rs6563164	intron_variant; upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs17052884	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs9545328	intron_variant	0.874[CEU]
rs9545395	intron_variant; upstream_gene_variant	1.0[CEU]; 0.834[GIH]; 1.0[TSI]
rs9545421	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs9565538		0.82[CEU]