ADHDgene Database

SNP Report

Basic Info

Name	rs8005625 dbSNP Ensembl
Location	Chr14:44010789(Fwd)
Variant Alleles	G/T
Ancestral Allele	G
Functional Annotation	nc_transcript_variant; non_coding_exon_variant.
Consequence to Transcript	nc_transcript_variant(ENST00000556193) non_coding_exon_variant(ENST00000556193)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (b)	T:G		GLM P-value=3.24E-05, meta-analysis P-value=0.6327 GLM P-value=3.24E-05, meta-analysis P-value=0.6327	One of the top 100 SNPs from imputed IMAGE II dataset One of the top 100 SNPs from imputed IMAGE II dataset	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location
KRT8P2	keratin 8 pseudogene 2	14q21.2

SNPs in LD with rs8005625 (count: 8) View in gBrowse (chr14:44010789..44105698 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.


rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]
rs7140723		1(0/1/0)	0.811[CEU]; 0.901[GIH]; 1.0[MEX]

rs_ID	Functional Annotation	r²[population]
rs17714118	upstream_gene_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.858[GIH]; 1.0[JPT]; 0.944[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[TSI]; 1.0[YRI]
rs17647279		0.875[CEU]
rs7158603		0.888[JPT]
rs7145383		0.812[CEU]
rs7141384	downstream_gene_variant; upstream_gene_variant	0.888[JPT]
rs7153850		0.812[CEU]
rs7159170		0.875[CEU]; 1.0[MEX]; 0.879[TSI]