ADHDgene Database

SNP Report

Basic Info

Name	rs7809589 dbSNP Ensembl
Location	Chr7:151473813(Fwd)
Variant Alleles	G/T
Ancestral Allele	T
Functional Annotation	NMD_transcript_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000488258) intron_variant(ENST00000392801; ENST00000287878; ENST00000488258; ENST00000461529; ENST00000481434) nc_transcript_variant(ENST00000461529; ENST00000481434)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (a)	T:G		P-value=1.38E-05 P-value=1.38E-05	one of top 50 hits from the Genome-Wide Attention-Deficit/Hy...... one of top 50 hits from the Genome-Wide Attention-Deficit/Hyperactivity Disorder (ADHD) meta-analysis More...	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
PRKAG2	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	7q35-q36	1(0/0/1)

SNPs in LD with rs7809589 (count: 2) View in gBrowse (chr7:151473511..151473813 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs7809018	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.819[CEU]; 0.857[CHB]; 1.0[JPT]; 0.862[YRI]
rs7792110	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.84[MEX]