ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs7632299 dbSNP Ensembl
Location	Chr3:143056467(Fwd)
Variant Alleles	G/A
Ancestral Allele	C
Functional Annotation	intron_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000316549) upstream_gene_variant(ENST00000479030)
No. of Studies	1 (significant: 1; non-significant: 0; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Brookes K, 2006	A/G		UNPHASED TDT P-value=0.0895; WHAP TDT P-value=0.028 UNPHASED TDT P-value=0.0895; WHAP TDT P-value=0.028	significant association was observed in WHAP analysis significant association was observed in WHAP analysis	Significant

SNP related genes (count: 2)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
SLC9A9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	3q23-q24	2(2/0/0)

Genes from other sources (count: 1)

Approved Symbol	Approved Name	Location
SLC9A9-AS1	SLC9A9 antisense RNA 1	3q24

SNPs in LD with rs7632299 (count: 32) View in gBrowse (chr3:143037982..143068818 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 32)

rs_ID	Functional Annotation	r²[population]
rs968587	intron_variant	0.843[CHB]; 1.0[CHD]; 0.891[JPT]
rs1393071	intron_variant	0.855[CEU]; 1.0[CHB]; 1.0[JPT]
rs10804690	intron_variant; upstream_gene_variant	0.915[CHB]; 0.943[JPT]
rs1550547	intron_variant	0.843[CHB]; 1.0[CHD]; 0.944[JPT]
rs6440164	intron_variant	0.916[CHB]; 0.97[CHD]; 0.944[JPT]
rs17637467	intron_variant	0.863[TSI]
rs11915857	intron_variant	0.916[CHB]; 0.969[CHD]; 0.824[GIH]; 1.0[JPT]; 0.825[MEX]
rs729511	intron_variant	0.843[CHB]; 0.97[CHD]; 0.944[JPT]
rs1837784	intron_variant; upstream_gene_variant	0.915[CHB]; 0.944[JPT]
rs1501629	intron_variant; upstream_gene_variant	0.916[CHB]; 0.941[CHD]; 0.944[JPT]
rs968586	intron_variant	0.916[CHB]; 0.938[CHD]; 0.944[JPT]
rs2883015	intron_variant	0.916[CHB]; 0.97[CHD]; 0.944[JPT]
rs10935489	intron_variant; upstream_gene_variant	0.823[ASW]; 1.0[CEU]; 1.0[CHB]; 0.97[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[MEX]; 0.955[TSI]; 0.828[YRI]
rs10804689	intron_variant; upstream_gene_variant	0.916[CHB]; 0.944[JPT]
rs2352725	intron_variant	0.916[CHB]; 0.943[JPT]
rs2165518	intron_variant; upstream_gene_variant	0.915[CHB]; 0.97[CHD]; 0.944[JPT]
rs9332458	intron_variant	0.855[CEU]; 1.0[CHB]; 1.0[CHD]; 0.824[GIH]; 1.0[JPT]; 0.912[MEX]
rs6769555	intron_variant; upstream_gene_variant	0.916[CHB]; 0.969[CHD]; 0.944[JPT]
rs12633063	intron_variant	0.881[CHD]
rs13087723	downstream_gene_variant; intron_variant	0.916[CHB]; 0.944[JPT]
rs10446325	downstream_gene_variant; intron_variant	0.845[CEU]; 1.0[CHB]; 1.0[JPT]
rs963885	intron_variant; upstream_gene_variant	0.881[CHD]
rs12493355	intron_variant; upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.962[YRI]
rs6768217	intron_variant	0.916[CHB]; 1.0[JPT]; 0.859[YRI]
rs12488603	intron_variant	0.818[TSI]
rs6440163	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs16853428	intron_variant	0.916[CHB]; 0.97[CHD]; 0.824[GIH]; 1.0[JPT]
rs1501628	intron_variant; upstream_gene_variant	0.916[CHB]; 0.944[JPT]
rs7652901	intron_variant; nc_transcript_variant	1.0[CEU]; 0.895[CHB]; 1.0[JPT]; 0.928[YRI]
rs10804691	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.962[YRI]
rs6806677	intron_variant; upstream_gene_variant	0.916[CHB]; 0.944[JPT]
rs10935488	intron_variant	0.843[CHB]; 0.944[JPT]