ADHDgene Database

SNP Report

Basic Info

Name	rs7210438 dbSNP Ensembl
Location	Chr17:79060180(Fwd)
Variant Alleles	C/T
Ancestral Allele	C
Functional Annotation	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000575750; ENST00000572329; ENST00000574804) downstream_gene_variant(ENST00000576470) intron_variant(ENST00000575712; ENST00000575750; ENST00000428708; ENST00000572329; ENST00000321280; ENST00000575989; ENST00000575245; ENST00000435091; ENST00000576225; ENST00000572918; ENST00000321300; ENST00000577097; ENST00000572073; ENST00000573894; ENST00000574688; ENST00000575958; ENST00000573677; ENST00000392411; ENST00000571530; ENST00000573659; ENST00000576364; ENST00000573017; ENST00000574804) nc_transcript_variant(ENST00000576225; ENST00000577097; ENST00000573894; ENST00000574688; ENST00000576364; ENST00000573017) upstream_gene_variant(ENST00000574027; ENST00000575841)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Ribases M, 2009(a)			Case-control test: P-value=0.62 for genotype analysis, P-val...... Case-control test: P-value=0.62 for genotype analysis, P-value=0.83 for allele analysis in Spanish adult ADHD group; P-value=0.87 for genotype analysis, P-value=0.64 for allele analysis in Spanish childhood ADHD group; P-value=0.52 for genotype analysis, P-value=0.42 for allele analysis in German adult ADHD group; P-value=0.26 for genotype analysis, P-value=0.39 for allele analysis in Norwegian adult ADHD group. More...	No association was found. No association was found.	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
BAIAP2	BAI1-associated protein 2	17q25	1(1/0/0)

SNPs in LD with rs7210438 (count: 4) View in gBrowse (chr17:79049273..79081724 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.


rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]
rs7503597	NMD_transcript_variant; intron_variant; nc_transcript_variant	1(0/1/0)	1.0[CHB]; 0.811[JPT]

rs_ID	Functional Annotation	r²[population]
rs12601810	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.919[ASW]; 0.907[CEU]; 0.846[CHB]; 0.948[CHD]; 0.81[JPT]; 0.866[LWK]; 0.865[MEX]; 1.0[YRI]
rs4969387	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	1.0[CEU]; 0.846[CHB]; 0.811[JPT]; 0.953[YRI]
rs4969380	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.813[CEU]; 1.0[CHB]; 1.0[CHD]; 0.897[JPT]; 0.853[MEX]; 0.89[TSI]